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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
WGPWGPVSPCPVTCGLGQTMEQRTCNCAGDATRTHICNTAVPCPVDGEWDSWGEWSPCIRRNMKSISCQEIPGQQSRGRT
CRGRKFDGHRCAGQQQDIRHCYSIQHCPLKGSWSEWSTWGLCMPPCGPNPTRARQRLCTPLLPKYPPTVSGEKNVTFWGR
PLPRCEELQGQKLVVEEKRPCLHVPACKDPE

The query sequence (length=191) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6rus:B 220 206 1.0000 0.8682 0.9272 4.35e-134 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
2 6rus:A 234 163 0.2775 0.2265 0.3252 6.19e-12 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
3 6rus:A 234 123 0.2199 0.1795 0.3415 1.19e-10 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
4 7yyk:A 114 102 0.1675 0.2807 0.3137 2.79e-07 1lsl:A
5 7yyk:A 114 120 0.2094 0.3509 0.3333 3.82e-07 1lsl:A
6 8ckk:B 121 109 0.1728 0.2727 0.3028 0.010 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
7 7r84:A 52 60 0.1152 0.4231 0.3667 0.031 7r84:C, 7r84:D
8 7r84:A 52 49 0.0942 0.3462 0.3673 0.24 7r84:C, 7r84:D
9 7r84:A 52 46 0.0942 0.3462 0.3913 0.77 7r84:C, 7r84:D
10 6qig:A 581 49 0.0942 0.0310 0.3673 0.051 3ghm:A, 3ghn:A, 3vn4:A
11 6ool:A 244 73 0.1099 0.0861 0.2877 0.12
12 7za1:E 251 58 0.1047 0.0797 0.3448 0.31 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
13 7r84:B 45 43 0.0890 0.3778 0.3953 0.44 7r85:A, 7r86:C
14 7r84:B 45 28 0.0733 0.3111 0.5000 2.0 7r85:A, 7r86:C
15 7r86:D 40 41 0.0838 0.4000 0.3902 0.68
16 7r86:D 40 28 0.0733 0.3500 0.5000 1.6
17 2ifw:A 206 42 0.0733 0.0680 0.3333 0.69 2ifr:A, 2ifw:B, 1s2k:A
18 7nyc:C 809 48 0.0890 0.0210 0.3542 0.70 7nyd:C
19 6yjt:AAA 513 52 0.1047 0.0390 0.3846 1.1 8ce3:A, 6yjt:BBB, 6yju:AAA, 6yju:BBB, 6yjv:AAA, 6yjv:BBB, 5zic:B
20 6yjs:BBB 486 52 0.1047 0.0412 0.3846 1.2 6yjs:AAA
21 3ojy:B 504 34 0.0733 0.0278 0.4118 1.7 8b0f:D
22 5foe:B 435 59 0.1152 0.0506 0.3729 3.7 5foe:A
23 5foe:B 435 43 0.0681 0.0299 0.3023 4.5 5foe:A
24 7nyc:D 487 33 0.0681 0.0267 0.3939 4.7 7nyd:D
25 7nyd:G 413 53 0.0890 0.0412 0.3208 6.3 8de6:A, 8de6:C, 8de6:G, 7nyc:H, 7nyd:H
26 6dlw:A 460 53 0.0890 0.0370 0.3208 6.9 6dlw:B, 6dlw:C, 6dlw:D, 6dlw:E, 6dlw:F, 6dlw:G, 6dlw:H, 6dlw:I, 6dlw:J, 6dlw:K, 6dlw:L, 6dlw:M, 6dlw:N, 6dlw:O, 6dlw:P, 6dlw:Q, 6dlw:R, 6dlw:S, 6dlw:T, 6dlw:U, 6dlw:V

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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