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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
WGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWANTYKYTDAGEFSKPYHFIDAQDNPPQSCGVDYDRDC
GSAGCSISAIQNYTNILLESPNGSEALNALKFVVHIIGDIHQPLHDENLEAGGNGIDVTYDGETTNLHHIWDTNMPEEAA
GGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTSMIWAADANTYVCSTVLDDGLAYINSTDLSGEYYDKS
QPVFEELIAKAGYRLAAWLDLIASQ

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5fb9:A 267 265 0.9962 0.9888 0.9962 0.0 5fb9:B, 5fba:A, 5fbb:A, 5fbb:B, 5fbc:A, 5fbd:A, 5fbf:A, 5fbg:A, 5fbg:B, 7qta:A, 7qta:B, 7qtb:A, 7qtb:B
2 1ak0:A 264 263 0.4981 0.5000 0.5019 3.14e-82
3 4cxv:A 258 276 0.3283 0.3372 0.3152 3.76e-31 4cwm:A, 4cwm:B, 4cxo:A, 4cxp:A, 4cxv:B, 3w52:A
4 3sng:A 267 272 0.2755 0.2734 0.2684 1.50e-25 4dj4:A, 4dj4:B, 4jdg:A
5 8qjp:A 250 267 0.2755 0.2920 0.2734 7.31e-25 8qjl:A, 8qjm:A, 8qjm:B, 8qjn:A, 8qjn:B, 8qjo:A, 8qjo:B, 8qjp:B, 8qjq:A, 8qjq:B
6 7l07:A 214 45 0.0642 0.0794 0.3778 0.26
7 5zvq:A 194 50 0.0642 0.0876 0.3400 0.27 8ab0:F, 8ab0:E, 8bpr:E, 8bpr:F
8 4kcf:A 407 75 0.0830 0.0541 0.2933 0.85 3m9v:A
9 5iki:B 399 63 0.0755 0.0501 0.3175 1.3 5iki:A, 5xnt:A, 4yt3:A, 4yt3:B
10 9c9y:A 612 62 0.0792 0.0343 0.3387 3.9 9ca0:A, 9ca1:A
11 8fy5:A 387 26 0.0377 0.0258 0.3846 6.9 8fy5:B, 8fyf:A, 8fyf:B
12 4n4r:C 533 73 0.0792 0.0394 0.2877 7.2 4n4r:A
13 1k3i:A 651 38 0.0528 0.0215 0.3684 9.5 2eib:A, 2eic:A, 2eid:A, 2eie:A, 1gof:A, 1gog:A, 2jkx:A, 1t2x:A, 8tx5:A, 8tx5:B, 8tx5:C, 8tx5:D, 8tx6:A, 2vz1:A, 2vz3:A, 2wq8:A, 6xlr:A, 6xls:A, 6xlt:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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