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BioLiP
>protein
WGAYEEPLSLVAGFLGWFAPSNIKVPAFGNESLFGAFHASMLENLANFPQGPALTDKFWILMITWHLGLFLALTLGNIGQ
AARKQGY

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6zzx:O 87 87 1.0000 1.0000 1.0000 2.27e-59
2 7dz7:O 97 82 0.5977 0.5361 0.6341 2.30e-31 7d0j:O, 7dz8:O
3 6sl5:O 86 82 0.4483 0.4535 0.4756 1.53e-23
4 7yca:O 96 78 0.4483 0.4062 0.5000 7.82e-22
5 8htu:O 90 84 0.4828 0.4667 0.5000 3.74e-21 7ksq:O, 7ku5:O, 7xqp:O
6 8wgh:O 89 75 0.4598 0.4494 0.5333 1.02e-20
7 8j6z:O 86 73 0.4368 0.4419 0.5205 3.70e-19
8 7y5e:ON 92 81 0.3908 0.3696 0.4198 4.94e-17 7y5e:O2, 7y7a:O7, 7y7a:Oo
9 8wm6:O 104 75 0.3793 0.3173 0.4400 6.39e-15 8wmv:O, 8wmw:O
10 6fos:O 98 80 0.3908 0.3469 0.4250 1.50e-12 7blz:O, 8wey:O, 5zgb:O, 5zgh:O
11 7y7b:O 99 78 0.3678 0.3232 0.4103 2.56e-12 7y8a:O
12 5zji:O 76 84 0.3563 0.4079 0.3690 1.98e-11
13 8b9w:A 329 28 0.1149 0.0304 0.3571 5.9 8b9w:B
14 1m06:F 422 46 0.1379 0.0284 0.2609 7.0 1rb8:F
15 2c8s:A 149 44 0.1724 0.1007 0.3409 7.5
16 7xlq:A 1319 31 0.1494 0.0099 0.4194 8.6 8epl:A, 7yg5:A
17 6hxs:A 248 31 0.1494 0.0524 0.4194 8.8 4f0d:A, 6hxr:A, 6hxr:B, 6hxs:B, 6hxs:C, 6w65:A, 6w65:B, 6w65:C
18 3zwm:H 253 27 0.1494 0.0514 0.4815 9.8 3i9j:A, 3i9j:B, 3i9k:B, 3i9l:A, 3i9o:A, 3i9o:B, 1r15:A, 1r15:B, 1r15:C, 1r15:D, 1r15:E, 1r15:F, 1r15:G, 1r15:H, 1r16:A, 1r16:B, 3zwm:A, 3zwm:B, 3zwm:C, 3zwm:D, 3zwm:E, 3zwm:F, 3zwm:G, 3zwn:A, 3zwn:B, 3zwo:A, 3zwo:B, 3zwo:C, 3zwo:E, 3zwo:F, 3zwo:G, 3zwo:H, 3zwp:A, 3zwp:B, 3zwp:C, 3zwp:D, 3zwp:E, 3zwp:F, 3zwp:G, 3zwp:H, 3zwv:A, 3zwv:H, 3zwv:B, 3zwv:C, 3zwv:D, 3zwv:E, 3zwv:F, 3zwv:G, 3zww:A, 3zww:B, 3zww:C, 3zww:D, 3zww:E, 3zww:F, 3zww:G, 3zww:H, 3zwx:A, 3zwx:B, 3zwx:C, 3zwx:D, 3zwx:E, 3zwx:F, 3zwx:G, 3zwx:H, 3zwy:A, 3zwy:B, 3zwy:C, 3zwy:D, 3zwy:E, 3zwy:F, 3zwy:G, 3zwy:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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