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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
WDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNW
SFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDI
DTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERNVALRSFAIGSVFGTLAIIGTLQLGDSS
AYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPEQDQERNAFALKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRG
RMAWLLMQEISQGNREPHVLQAFRGLEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRIMVGCGSLLL
LVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTTGQLAFSLIMIVGL
YTLFLIAEVYLMQKYARLGPSAM

The query sequence (length=503) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ose:A 503 503 1.0000 1.0000 1.0000 0.0 7ose:D
2 7oy2:C 454 503 0.9026 1.0000 0.9026 0.0
3 6rx4:A 474 502 0.5785 0.6139 0.5797 0.0
4 6rko:A 444 502 0.5507 0.6239 0.5518 0.0
5 7nkz:A 455 512 0.3678 0.4066 0.3613 2.63e-98
6 7d5i:A 443 264 0.2425 0.2754 0.4621 1.21e-74
7 7d5i:A 443 130 0.0895 0.1016 0.3462 3.97e-13
8 8b4o:A 442 256 0.2266 0.2579 0.4453 1.14e-68
9 8b4o:A 442 157 0.0895 0.1018 0.2866 1.41e-06
10 5doq:A 432 320 0.1909 0.2222 0.3000 2.71e-34 5ir6:A
11 5doq:A 432 117 0.0716 0.0833 0.3077 1.92e-08 5ir6:A
12 4hd5:A 316 65 0.0318 0.0506 0.2462 1.2 4v33:A, 4v33:B
13 2gfq:A 288 43 0.0318 0.0556 0.3721 2.9 2gfq:B, 2gfq:C
14 7y1j:A 1204 67 0.0437 0.0183 0.3284 4.9
15 1oj7:A 390 87 0.0577 0.0744 0.3333 5.9 1oj7:B, 1oj7:C, 1oj7:D, 4qgs:A
16 7t2r:E 179 83 0.0358 0.1006 0.2169 6.3 7t2r:J, 7t30:E, 7t30:J
17 4a37:B 376 81 0.0457 0.0612 0.2840 6.6 4a37:A, 4a38:A, 4a38:B, 4a39:A, 4a39:B
18 6btx:A 377 161 0.0815 0.1088 0.2547 7.9
19 7sqr:A 522 53 0.0378 0.0364 0.3585 9.1 7sqr:D, 7sqr:G, 7sqr:J, 7sqs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218