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BioLiP
>protein
WDEWSPWSLCSSTCGRGFRDRTRTCRPPQEGPEKQTKFCNIALCP

The query sequence (length=45) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7r84:B 45 45 1.0000 1.0000 1.0000 2.20e-28 7r85:A, 7r86:C
2 7r84:A 52 51 1.0000 0.8654 0.8824 1.26e-25 7r84:C, 7r84:D
3 7r86:D 40 45 0.8889 1.0000 0.8889 5.63e-22
4 7yyk:A 114 53 0.5111 0.2018 0.4340 5.98e-07 1lsl:A
5 7yyk:A 114 53 0.4444 0.1754 0.3774 1.02e-05 1lsl:A
6 6ool:A 244 39 0.4222 0.0779 0.4872 2.36e-05
7 5foe:B 435 47 0.4222 0.0437 0.4043 2.84e-05 5foe:A
8 7za1:E 251 39 0.3778 0.0677 0.4359 1.02e-04 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
9 4hqo:A 257 20 0.2667 0.0467 0.6000 4.19e-04 4hql:A, 4hql:B, 4hqn:A, 4hqn:B
10 8ckk:B 121 47 0.3778 0.1405 0.3617 0.002 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
11 6rus:A 234 28 0.3111 0.0598 0.5000 0.004 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
12 6rus:A 234 25 0.2667 0.0513 0.4800 0.57 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
13 6rus:A 234 43 0.3111 0.0598 0.3256 1.4 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
14 6qig:A 581 52 0.4000 0.0310 0.3462 0.004 3ghm:A, 3ghn:A, 3vn4:A
15 6rus:B 220 51 0.4000 0.0818 0.3529 0.096 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
16 6rus:B 220 28 0.3111 0.0636 0.5000 0.34 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
17 4e0s:B 898 51 0.3778 0.0189 0.3333 1.6 7nyc:B, 7nyd:B
18 4e0s:B 898 20 0.2000 0.0100 0.4500 4.5 7nyc:B, 7nyd:B
19 4a5w:B 871 51 0.3778 0.0195 0.3333 1.6
20 4a5w:B 871 20 0.2000 0.0103 0.4500 4.7
21 6pnx:B 294 27 0.2222 0.0340 0.3704 3.1 9cd7:B, 9cd7:C, 7dhl:A, 4k33:A, 6lvm:A, 6pnx:A, 8udt:A, 8udt:B, 8udt:C, 8udu:A, 8udu:B, 8udv:A, 8udv:B
22 3t5o:A 871 39 0.3556 0.0184 0.4103 3.7
23 3t5o:A 871 20 0.2000 0.0103 0.4500 4.9
24 6brh:B 502 18 0.1778 0.0159 0.4444 4.0 6brg:A, 6brg:B, 6brg:C, 6brg:D, 6brh:A, 6brk:A
25 4dm9:A 223 27 0.1778 0.0359 0.2963 4.3 4dm9:B, 8ede:A, 8ede:B, 3ifw:A, 3kvf:A, 3kw5:A, 8pw1:A, 8pw1:B, 8pw1:C, 8pw1:D, 8pw1:E, 8pw1:F, 8pw1:G, 8pw1:H, 8pw1:I, 8pw1:J, 7zm0:A, 7zm0:B, 7zm0:C, 7zm0:D, 7zm0:H, 7zm0:E, 7zm0:F, 7zm0:G, 7zm0:I, 7zm0:J
26 5lzb:z 614 12 0.1778 0.0130 0.6667 5.4 5lzc:z, 5lzd:z, 2pjp:A
27 5gan:B 1781 35 0.2889 0.0073 0.3714 5.5 4bgd:A, 5gao:B, 5gap:B, 5nrl:B, 5zwm:D, 5zwo:D
28 5epi:B 756 28 0.2222 0.0132 0.3571 5.6 8bdr:B, 8be0:B, 8bf5:B, 5epi:F, 5epi:J, 5epi:N, 5epi:R, 5epi:V, 6f5o:B, 5fmz:E, 5m3j:B, 5msg:B, 6qcs:B, 6qct:B, 6qcv:B, 6qcw:B, 6qcx:B, 7r1f:B, 8rn1:B, 8rn4:B, 8rn5:B, 8rn7:B, 8rn8:E, 8rn9:B, 8rnc:B, 6t0w:B, 4wrt:B, 4wsa:B, 7z42:E, 7z42:B, 7z43:BBB
29 6qwl:K 539 28 0.2222 0.0186 0.3571 5.8
30 5fmz:B 708 28 0.2222 0.0141 0.3571 6.2 8rn8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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