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BioLiP
>protein
WDEWSPWSLCSSTCGRGFRDRTRTCRPEKQTKFCNIALCP

The query sequence (length=40) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7r86:D 40 40 1.0000 1.0000 1.0000 1.63e-24
2 7r84:B 45 45 1.0000 0.8889 0.8889 5.00e-22 7r85:A, 7r86:C
3 7r84:A 52 51 1.0000 0.7692 0.7843 4.82e-21 7r84:C, 7r84:D
4 4hqo:A 257 41 0.4500 0.0700 0.4390 5.24e-05 4hql:A, 4hql:B, 4hqn:A, 4hqn:B
5 6ool:A 244 25 0.3750 0.0615 0.6000 1.00e-04
6 7yyk:A 114 26 0.3500 0.1228 0.5385 1.19e-04 1lsl:A
7 7yyk:A 114 37 0.4500 0.1579 0.4865 3.30e-04 1lsl:A
8 7za1:E 251 25 0.3250 0.0518 0.5200 6.81e-04 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
9 5foe:B 435 47 0.4250 0.0391 0.3617 0.002 5foe:A
10 8ckk:B 121 36 0.3250 0.1074 0.3611 0.002 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
11 6rus:A 234 25 0.3250 0.0556 0.5200 0.008 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
12 6rus:A 234 25 0.3000 0.0513 0.4800 0.73 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
13 6rus:A 234 24 0.2250 0.0385 0.3750 3.1 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
14 6qig:A 581 52 0.4500 0.0310 0.3462 0.13 3ghm:A, 3ghn:A, 3vn4:A
15 6rus:B 220 37 0.3750 0.0682 0.4054 0.18 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
16 6rus:B 220 28 0.3500 0.0636 0.5000 0.25 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
17 4e0s:B 898 33 0.3250 0.0145 0.3939 0.97 7nyc:B, 7nyd:B
18 4a5w:B 871 33 0.3250 0.0149 0.3939 1.0
19 3t5o:A 871 33 0.3250 0.0149 0.3939 1.1
20 6brh:B 502 18 0.2000 0.0159 0.4444 2.9 6brg:A, 6brg:B, 6brg:C, 6brg:D, 6brh:A, 6brk:A
21 5lzb:z 614 12 0.2000 0.0130 0.6667 3.8 5lzc:z, 5lzd:z, 2pjp:A
22 2hxs:A 178 15 0.1750 0.0393 0.4667 5.9 3e5h:A
23 7zpf:A 464 20 0.2000 0.0172 0.4000 9.2 7zpf:B, 7zpf:C, 7zpf:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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