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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
WADADIAELVDERTGRLDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLN
QCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAPDLDT
YLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGILAGLPTEGIQYRATWGGHGSGF
YIGDPNLLLAIMGPKVTEYWTQGPAAEKASERLGSTERGQQLMAQHMTIFPTCSFLPGINTIRAWHPRGPNEIEVWAFTV
VDADAPEEMKEEYRQQTLRTFSAGGVFEQDDGENWVEIQQVLRGHKARSRPFNAEMGLGQTDSDNPDYPGTISYVYSEEA
ARGLYTQWVRMMTSPDWAALDATR

The query sequence (length=424) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1uli:C 425 424 0.9976 0.9953 0.9976 0.0 1uli:A, 1uli:E, 1ulj:A, 1ulj:C, 1ulj:E
2 3en1:A 424 424 0.7807 0.7807 0.7807 0.0 3eqq:A
3 5aeu:A 433 432 0.7075 0.6928 0.6944 0.0 5aeu:C, 5aeu:E, 5aeu:G, 5aew:A, 5aew:C, 5aew:E, 5aew:G, 5aew:I, 5aew:K, 5aew:M, 5aew:O, 5aew:Q, 5aew:S, 5aew:U, 5aew:W, 2xr8:A, 2xr8:C, 2xr8:E, 2xr8:G, 2xr8:I, 2xr8:K, 2xr8:M, 2xr8:O, 2xr8:Q, 2xr8:S, 2xr8:U, 2xr8:W, 2xrx:A, 2xrx:C, 2xrx:E, 2xrx:G, 2xrx:I, 2xrx:K, 2xrx:M, 2xrx:O, 2xrx:Q, 2xrx:S, 2xrx:U, 2xrx:W, 2xsh:A, 2xsh:C, 2xsh:E, 2xsh:G, 2xsh:I, 2xsh:K, 2xso:A, 2xso:C, 2xso:E, 2xso:G, 2xso:I, 2xso:K, 2xso:M, 2xso:O, 2xso:Q, 2xso:S, 2xso:U, 2xso:W, 2yfi:A, 2yfi:C, 2yfi:E, 2yfi:G, 2yfi:I, 2yfi:K, 2yfj:A, 2yfj:C, 2yfj:E, 2yfj:G, 2yfj:I, 2yfj:K, 2yfl:A, 2yfl:C, 2yfl:E, 2yfl:G, 2yfl:I, 2yfl:K
4 3gzx:A 440 438 0.6934 0.6682 0.6712 0.0 3gzy:A
5 1wql:A 436 435 0.6934 0.6743 0.6759 0.0
6 2gbw:A 449 434 0.4057 0.3831 0.3963 3.44e-102 2ckf:A, 2gbw:C, 2gbw:E, 2gbx:A, 2gbx:C, 2gbx:E
7 2ckf:E 433 419 0.3915 0.3834 0.3962 7.07e-98 2ckf:C
8 2b1x:A 441 415 0.3656 0.3515 0.3735 4.89e-84 2b1x:C, 2b1x:E, 2b24:A, 2b24:C, 2b24:E
9 5xbp:A 444 436 0.3538 0.3378 0.3440 1.15e-76 5xbp:D, 5xbp:G
10 1eg9:A 447 430 0.3396 0.3221 0.3349 1.40e-75 4hjl:A, 4hkv:A, 2hmj:A, 2hmk:A, 2hml:A, 2hmm:A, 2hmn:A, 2hmo:A, 4hm0:A, 4hm1:A, 4hm2:A, 4hm3:A, 4hm4:A, 4hm5:A, 4hm6:A, 4hm7:A, 4hm8:A, 1ndo:A, 1ndo:C, 1ndo:E, 1o7g:A, 1o7h:A, 1o7m:A, 1o7n:A, 1o7p:A, 1o7w:A, 1uuv:A, 1uuw:A
11 2bmo:A 437 421 0.3373 0.3272 0.3397 6.16e-73 2bmq:A, 2bmr:A
12 7c8z:A 383 409 0.2948 0.3264 0.3056 6.83e-37 7c8z:C, 7c8z:E, 7c8z:G
13 7yls:B 436 387 0.2453 0.2385 0.2687 1.20e-34 8h2t:B, 8h2t:D, 8h2t:G
14 7q05:E 409 404 0.2665 0.2763 0.2797 5.90e-33 7q04:D, 7q04:E, 7q04:F, 7q05:D, 7q05:F, 7q06:D, 7q06:E, 7q06:F, 7vju:A, 7vju:C, 7vju:E
15 4qur:A 415 354 0.2382 0.2434 0.2853 1.30e-24 5hl4:A, 4qup:A, 4quq:A, 3vca:A, 3vcp:A
16 3n0q:A 402 350 0.2217 0.2338 0.2686 7.11e-24
17 6y9c:A 365 196 0.1250 0.1452 0.2704 8.31e-20 6y8s:A, 6y9d:A, 6y9d:B, 6y9d:C, 6y9d:D, 6y9d:E, 6y9d:F, 6y9d:G, 6y9d:H, 6y9d:I, 6y9d:J, 6y9d:K, 6y9d:L, 6zgp:A, 6zgp:B, 6zgp:C, 6zgp:D, 6zgp:E, 6zgp:F, 6zgp:G, 6zgp:H, 6zgp:I, 6zgp:J, 6zgp:K, 6zgp:L
18 6y8j:A 343 196 0.1226 0.1516 0.2653 2.50e-19
19 6wn3:B 328 75 0.0519 0.0671 0.2933 2.22e-05 7szh:A, 7szh:B, 7szh:C, 6wn3:A, 6wn3:C, 6wnb:A, 6wnb:B, 6wnb:C
20 7sze:B 329 75 0.0519 0.0669 0.2933 3.41e-05 7sze:A, 7sze:C, 7szf:A, 7szf:B, 7szf:C, 7szg:A, 7szg:B, 7szg:C, 6wnc:A, 6wnc:B, 6wnc:C, 6wnd:A, 6wnd:B, 6wnd:C
21 3gcf:A 367 68 0.0566 0.0654 0.3529 4.86e-04 3gcf:B, 3gcf:C, 3gcf:D, 3gcf:E, 3gcf:F, 3gcf:G, 3gcf:H, 3gcf:I, 3gcf:J, 3gcf:K, 3gcf:L, 3gcf:M, 3gcf:N, 3gcf:O
22 1z01:A 427 55 0.0472 0.0468 0.3636 5.31e-04 1z01:B, 1z01:C, 1z01:D, 1z01:E, 1z01:F, 1z02:A, 1z02:B, 1z02:C, 1z02:D, 1z02:E, 1z02:F, 1z03:A, 1z03:B, 1z03:C, 1z03:D, 1z03:E, 1z03:F
23 7v28:B 425 165 0.0920 0.0918 0.2364 0.001 7fjl:A, 7fjl:B, 7fjl:C, 7fjl:D, 7fjl:E, 7fjl:F, 7v25:B, 7v25:A, 7v25:C, 7v25:D, 7v25:E, 7v25:F, 7v28:A, 7v28:C, 7v28:D, 7v28:E, 7v28:F
24 4qdc:A 369 108 0.0566 0.0650 0.2222 0.002 4qdd:A, 4qdf:A
25 7fhr:A 437 92 0.0495 0.0481 0.2283 0.010
26 4qdf:B 357 116 0.0637 0.0756 0.2328 0.016
27 3gkq:A 374 85 0.0448 0.0508 0.2235 0.024 3gkq:B, 3gkq:C, 3gkq:D, 3gkq:E, 3gkq:F
28 6vsh:C 320 66 0.0472 0.0625 0.3030 0.029 3gke:C, 3gl0:C, 3gl2:C
29 3gob:A 342 66 0.0472 0.0585 0.3030 0.029 3gb4:A, 3gb4:B, 3gb4:C, 3gke:A, 3gke:B, 3gl0:A, 3gl0:B, 3gl2:A, 3gl2:B, 3gob:B, 3gob:C, 3gte:A, 3gte:B, 3gte:C, 3gts:A, 3gts:B, 3gts:C, 6vsh:A, 6vsh:B
30 2de6:B 390 75 0.0401 0.0436 0.2267 0.039 7bug:A, 7bug:B, 7bug:C, 7bui:A, 7bui:B, 7bui:C, 2de5:A, 2de5:B, 2de5:C, 2de6:A, 2de6:C, 2de7:A, 2de7:B, 2de7:C, 6ll0:A, 6ll0:B, 6ll0:C, 6ll1:A, 6ll1:B, 6ll1:C, 6ll4:A, 6ll4:B, 6ll4:C, 6llf:A, 6llf:B, 6llf:C, 6llh:A, 6llh:B, 6llh:C, 6llk:A, 6llm:A, 4nb8:A, 4nb8:B, 4nb8:C, 4nb9:A, 4nb9:B, 4nb9:C, 4nba:A, 4nba:B, 4nba:C, 4nbb:A, 4nbb:B, 4nbb:C, 4nbc:A, 4nbc:B, 4nbc:C, 4nbd:A, 4nbd:B, 4nbd:C, 4nbe:A, 4nbe:B, 4nbe:C, 4nbf:A, 4nbf:B, 4nbf:C, 4nbg:A, 4nbg:B, 4nbg:C, 4nbh:A, 4nbh:B, 4nbh:C, 3vmg:A, 3vmg:B, 3vmg:C, 3vmh:A, 3vmh:B, 3vmh:C, 3vmi:A, 3vmi:B, 3vmi:C, 1ww9:A
31 6icl:A 338 59 0.0425 0.0533 0.3051 0.042
32 6icn:A 344 55 0.0448 0.0552 0.3455 0.074 6ick:A, 6ick:B, 6ick:C, 6icm:A, 6icm:B, 6icm:C, 6icn:B, 6icn:C, 6ico:A, 6ico:B, 6ico:C, 6icp:A, 6icp:B, 6icp:C, 6icq:A, 6icq:B, 6icq:C
33 3wnu:A 710 61 0.0448 0.0268 0.3115 1.1 4pae:A, 1ub2:A, 3wxo:A, 3x16:A
34 4u03:A 389 136 0.0708 0.0771 0.2206 2.3 4txy:A, 4txz:A, 4ty0:A, 4u03:B, 4u0m:A, 4u0m:B, 4u0n:A, 4u0n:B, 4xj4:A
35 4xp9:C 537 43 0.0283 0.0223 0.2791 3.6 9euo:A, 9eup:A, 6m0f:A, 6m0z:A, 6m2r:A, 6m38:A, 6m3z:A, 4m48:A, 6m47:A, 7wgd:A, 7wgt:A, 7wlw:A, 4xnu:A, 4xnx:A, 4xp1:A, 4xp4:A, 4xp5:A, 4xp6:A, 4xpa:A, 4xpb:A, 4xpf:A, 4xpg:A, 4xph:A, 4xpt:A
36 2zyl:A 359 87 0.0472 0.0557 0.2299 4.5 4qck:A
37 6zu5:SI0 169 52 0.0401 0.1006 0.3269 5.7
38 8urw:Z 1235 62 0.0495 0.0170 0.3387 6.1 8syi:Z
39 8iuf:QE 231 47 0.0354 0.0649 0.3191 6.2 8iuf:Qe, 8iuj:QE, 8iuj:Qe
40 2i7f:A 102 61 0.0401 0.1667 0.2787 9.9 2i7f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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