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BioLiP
>protein
VWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPII
GRTAAQCLEHYEFLLDKAA

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8i0s:L 169 99 1.0000 0.5858 1.0000 2.66e-70
2 5mqf:L 336 99 1.0000 0.2946 1.0000 1.20e-69
3 8ch6:P 330 99 1.0000 0.3000 1.0000 1.28e-69 8i0t:L, 7qtt:P
4 8i0u:L 387 99 1.0000 0.2558 1.0000 4.04e-69 8i0v:L
5 6qdv:O 441 99 1.0000 0.2245 1.0000 6.78e-69 7w59:L, 7w5a:L, 7w5b:L
6 5z56:L 342 99 1.0000 0.2895 1.0000 7.17e-69 5z57:L, 5z58:L
7 8i0w:L 419 99 1.0000 0.2363 1.0000 1.77e-68 5yzg:L
8 6icz:L 454 99 1.0000 0.2181 1.0000 2.25e-68 5xjc:L
9 6id0:L 475 99 1.0000 0.2084 1.0000 3.08e-68 6id1:L
10 9fmd:L 555 99 1.0000 0.1784 1.0000 1.44e-67 8c6j:O, 7dvq:L, 6ff4:L, 8i0p:L, 8i0r:L, 6zym:L
11 8ro2:L 555 99 1.0000 0.1784 1.0000 1.92e-67 7abi:L
12 8ro1:L 623 98 0.8889 0.1413 0.8980 1.03e-60 8ro0:L
13 3jb9:W 426 96 0.8081 0.1878 0.8333 1.41e-54
14 7b9v:O 280 96 0.5253 0.1857 0.5417 4.48e-33
15 5lj5:O 283 96 0.5253 0.1837 0.5417 7.01e-33
16 6exn:O 320 96 0.5253 0.1625 0.5417 1.19e-32 6bk8:S
17 7dco:L 435 96 0.5253 0.1195 0.5417 4.73e-32
18 5gm6:c 415 96 0.5253 0.1253 0.5417 6.36e-32
19 6j6g:c 436 95 0.5253 0.1193 0.5474 7.76e-32 6j6h:c, 6j6n:c, 6j6q:c, 5y88:J, 5ylz:J
20 5gmk:c 436 95 0.5253 0.1193 0.5474 1.11e-31 5lj3:O, 5mps:O, 5mq0:O, 5wsg:c
21 3zqc:J 119 79 0.3030 0.2521 0.3797 1.68e-14 3zqc:A, 3zqc:D, 3zqc:G
22 3zqc:J 119 40 0.1414 0.1176 0.3500 5.4 3zqc:A, 3zqc:D, 3zqc:G
23 6kks:A 106 99 0.3333 0.3113 0.3333 1.03e-13
24 1h88:C 152 95 0.3333 0.2171 0.3474 1.24e-13 1h89:C, 1h8a:C, 1mse:C, 1msf:C
25 1h88:C 152 97 0.3434 0.2237 0.3505 4.78e-13 1h89:C, 1h8a:C, 1mse:C, 1msf:C
26 1h88:C 152 48 0.1919 0.1250 0.3958 0.037 1h89:C, 1h8a:C, 1mse:C, 1msf:C
27 3osg:A 110 79 0.3232 0.2909 0.4051 3.02e-12 3osf:A, 3osf:D, 3osg:D
28 2kdz:A 107 54 0.2020 0.1869 0.3704 3.22e-09
29 2kdz:A 107 40 0.1212 0.1121 0.3000 3.4
30 5eyb:A 340 103 0.3434 0.1000 0.3301 2.11e-07 5eyb:B
31 8ity:4 365 95 0.3333 0.0904 0.3474 3.77e-07 8iue:4, 8iuh:4
32 8ity:4 365 78 0.2828 0.0767 0.3590 2.83e-06 8iue:4, 8iuh:4
33 8ity:4 365 98 0.3232 0.0877 0.3265 1.93e-05 8iue:4, 8iuh:4
34 8ity:4 365 102 0.2929 0.0795 0.2843 0.012 8iue:4, 8iuh:4
35 7xur:A 307 95 0.3333 0.1075 0.3474 3.78e-07
36 7xur:A 307 106 0.3535 0.1140 0.3302 5.28e-06
37 7xur:A 307 98 0.3232 0.1042 0.3265 1.61e-05
38 7xur:A 307 102 0.2929 0.0945 0.2843 0.009
39 7zwc:c 303 76 0.2828 0.0924 0.3684 2.04e-06 7zwd:c, 7zx7:c, 7zx8:c, 7zxe:c
40 7zwc:c 303 69 0.2222 0.0726 0.3188 0.011 7zwd:c, 7zx7:c, 7zx8:c, 7zxe:c
41 4a69:C 69 42 0.1414 0.2029 0.3333 0.14 4a69:D
42 8ox1:M 65 40 0.1717 0.2615 0.4250 0.20 1iv6:A, 8ox1:L, 1w0t:A, 1w0t:B
43 7c4p:A 55 43 0.1616 0.2909 0.3721 0.22 7c4p:B, 7c4q:A, 7c4q:B, 7c4r:A, 7c4r:B
44 8buu:d 199 40 0.1313 0.0653 0.3250 1.4 8cdu:F, 8cdv:F, 8cec:F, 8ced:F, 8cee:F, 6ha1:d, 6ha8:d, 6htq:d, 3j9w:AD, 5njt:D, 7o5b:D, 7qgu:i, 7qh4:h, 8qpp:D, 7qv1:d, 7qv2:d, 7qv3:d, 8r55:D
45 1vfc:A 63 42 0.1515 0.2381 0.3571 1.8 3sjm:A, 3sjm:B, 1w0u:A, 1w0u:B
46 9gd1:W 849 24 0.1111 0.0130 0.4583 2.1
47 7tn2:W 895 24 0.1111 0.0123 0.4583 2.1 9gd2:W, 9gd3:W
48 6clv:C 257 30 0.1111 0.0428 0.3667 4.8 1ad4:A, 6clv:A, 6clv:B
49 6g0l:M 855 24 0.1111 0.0129 0.4583 5.8 7nkx:W, 5o9g:W
50 6ftx:W 878 24 0.1111 0.0125 0.4583 5.8 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
51 2eh6:A 375 25 0.1111 0.0293 0.4400 5.9 2eh6:B
52 5x71:A 796 42 0.1111 0.0138 0.2619 6.9 5x6y:A, 5x6y:C, 5x6z:C, 5x6z:A, 5x6z:D, 5x6z:B, 5x70:A, 5x70:B, 5x71:B
53 7r9g:A 386 14 0.0808 0.0207 0.5714 8.7 7r9f:A
54 4v58:G 2060 66 0.2020 0.0097 0.3030 8.9 4v58:H, 4v58:I, 4v58:J, 4v58:K, 4v58:L, 4v59:G, 4v59:H, 4v59:I, 4v59:J, 4v59:K, 4v59:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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