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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VWGHTQLNRLSFLETVPVVPLRVSDESSEDRPTWSLPDIENVAITHKKPNGLVDTLAYRSVRTCRWLFDTFSLYRFGSIT
ESKVISRCLFLETVAGVPGMVGGMLRHLSSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQPGLPLRVSIIITQAIMY
LFLLVAYVISPRFVHRFVGYLEEEAVITYTGVMRAIDEGRLRPTKNDVPEVARVYWNLSKNATFRDLINVIRADEAEHRV
VNHTFADMHEKRLQNSVNPFVVLKKNPE

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3vv9:B 268 268 1.0000 1.0000 1.0000 0.0 5gn7:A, 5gn7:B, 5gn7:C, 5gn7:D, 5gn9:A, 5gn9:B, 5gn9:C, 5gn9:D, 3vv9:A, 3vv9:C, 3vv9:D, 3vva:A, 3vva:B, 3vva:C, 3vva:D, 3w54:A, 3w54:B, 3w54:C, 3w54:D, 5zdp:A, 5zdp:B, 5zdp:C, 5zdp:D, 5zdq:A, 5zdq:B, 5zdq:C, 5zdq:D, 5zdr:A, 5zdr:B, 5zdr:C, 5zdr:D
2 7xrl:D 554 179 0.1418 0.0686 0.2123 0.63 3auj:A, 3auj:L, 1dio:A, 1dio:L, 1eex:A, 1eex:L, 1egm:A, 1egm:L, 1egv:A, 1egv:L, 1iwb:A, 1iwb:L, 1uc4:A, 1uc4:L, 1uc5:A, 1uc5:L, 7xrk:A, 7xrk:D, 7xrl:A, 5yrt:A, 5yrt:D, 5yrt:G, 5yrt:J, 5yrv:A, 5yrv:D, 5yrv:G, 5yrv:J, 5ysh:A, 5ysh:D, 5ysh:G, 5ysh:J
3 2j0k:A 598 81 0.0933 0.0418 0.3086 0.94 4gu9:A, 4kab:A, 4kao:A, 1mp8:A, 4q9s:A
4 4iof:A 932 72 0.0933 0.0268 0.3472 2.2
5 4uwq:A 548 91 0.1007 0.0493 0.2967 3.9 4uwq:D, 4uwq:G, 4uwq:J, 2wdc:A, 2wdd:A, 2wde:A, 2wdf:A
6 6ltb:A 928 30 0.0485 0.0140 0.4333 4.6 6ltc:A, 6ltd:A, 6ltd:B
7 3e49:A 307 49 0.0560 0.0489 0.3061 5.1 3e49:B, 3e49:C, 3e49:D
8 7un9:H 261 44 0.0560 0.0575 0.3409 6.0
9 6ty4:A 621 50 0.0672 0.0290 0.3600 7.0 4brx:A, 3bz3:A, 4c7t:A, 4d4s:B, 4d4v:B, 4d58:B, 4d5h:A, 4ebv:A, 4ebw:A, 2etm:A, 2etm:B, 6gcr:A, 6gcw:A, 6gcw:B, 6gcx:A, 4gu6:A, 4gu6:B, 4gu9:B, 4i4e:A, 4i4f:A, 6i8z:A, 2ijm:A, 2ijm:B, 2j0j:A, 2j0k:B, 2j0l:A, 2j0m:B, 2jkk:A, 2jkm:A, 2jko:A, 2jkq:A, 4k8a:A, 4k8a:B, 4k9y:A, 4kab:B, 4kao:B, 7pi4:DDD, 3pxk:A, 3pxk:B, 6ty4:B, 6yoj:A, 6yq1:A, 6yq1:B, 6yq1:C, 6yq1:D, 6yr9:A, 6yr9:B, 6yr9:C, 6yr9:D, 6yt6:A, 6yt6:B, 6yvs:A, 6yvs:B, 6yvs:C, 6yvs:D, 6yvy:A, 6yvy:B, 6yvy:C, 6yvy:D, 6yxv:A, 6yxv:B, 6yxv:C, 6yxv:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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