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BioLiP
>protein
VVVLEAKNGNVTFDHKKHAGVKGECKACHETEAGGKIAGMGKDWAHKTCTGCHKEMGKGPTKCGECHK

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3h4n:B 69 68 1.0000 0.9855 1.0000 2.27e-43 3h4n:A
2 3bxu:A 71 69 0.6176 0.5915 0.6087 1.75e-21 3bxu:B
3 3h34:A 70 67 0.5441 0.5286 0.5522 3.23e-21
4 4haj:A 71 68 0.6029 0.5775 0.6029 1.83e-19 4hb6:A, 4hb8:A, 4hbf:A, 4hc3:A, 4hdl:A, 2ldo:A, 2lzz:A, 2mz9:A, 2n91:A, 1os6:A, 3sel:X, 3sj0:X, 3sj1:X, 3sj4:X
5 3h33:A 72 68 0.4853 0.4583 0.4853 1.33e-14
6 1ehj:A 68 68 0.5735 0.5735 0.5735 9.26e-11 1f22:A, 1hh5:A, 1kwj:A, 1l3o:A, 1lm2:A, 1new:A
7 3cao:A 103 48 0.3088 0.2039 0.4375 3.24e-07 3car:A
8 1z1n:X 516 82 0.4118 0.0543 0.3415 6.88e-04
9 1z1n:X 516 48 0.2647 0.0349 0.3750 0.23
10 1z1n:X 516 57 0.2500 0.0329 0.2982 0.45
11 2cy3:A 118 91 0.4118 0.2373 0.3077 0.008 1w7o:A
12 1aqe:A 110 91 0.3235 0.2000 0.2418 0.011 1czj:A
13 1gws:A 503 74 0.3088 0.0417 0.2838 0.056 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
14 1gws:A 503 78 0.3382 0.0457 0.2949 0.40 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
15 1gws:A 503 48 0.2353 0.0318 0.3333 0.62 2cvc:A, 1h29:A, 1h29:B, 1h29:C, 1h29:D
16 2e84:A 513 94 0.4412 0.0585 0.3191 0.086
17 2e84:A 513 47 0.2647 0.0351 0.3830 0.13
18 2e84:A 513 74 0.2941 0.0390 0.2703 0.38
19 2e84:A 513 51 0.2206 0.0292 0.2941 4.4
20 6kls:C 236 46 0.2353 0.0678 0.3478 0.12 6kls:F, 6klv:C, 6klv:F
21 2bq4:B 115 107 0.4265 0.2522 0.2710 0.19 2bq4:A
22 6lod:A 218 44 0.1618 0.0505 0.2500 0.44 6loe:A
23 4nwv:A 355 41 0.2500 0.0479 0.4146 1.2 4nwv:C, 4nwv:B, 4nww:A, 4nww:B, 4nww:C
24 7mq8:LH 746 53 0.2647 0.0241 0.3396 1.3 7mq9:LH, 7mqa:LH
25 3eph:A 402 23 0.1471 0.0249 0.4348 1.4 3eph:B, 3epj:A, 3epj:B, 3epk:A, 3epk:B, 3epl:A, 3epl:B
26 1duw:A 289 69 0.2647 0.0623 0.2609 1.6
27 19hc:A 292 71 0.2941 0.0685 0.2817 1.8 19hc:B, 1ofw:A, 1ofw:B, 1ofy:A, 1ofy:B
28 19hc:A 292 49 0.2647 0.0616 0.3673 7.1 19hc:B, 1ofw:A, 1ofw:B, 1ofy:A, 1ofy:B
29 4qo5:A 521 25 0.1471 0.0192 0.4000 2.0
30 4qo5:A 521 57 0.2206 0.0288 0.2632 9.9
31 4lmh:D 695 51 0.2647 0.0259 0.3529 2.7 4lmh:A, 4lmh:B, 4lmh:C
32 6jzb:A 251 21 0.1324 0.0359 0.4286 6.7
33 6adq:C 223 56 0.2500 0.0762 0.3036 7.9 6adq:O, 6hwh:M, 6hwh:K, 8ovc:O, 8ovc:C, 8ovd:O, 8ovd:C, 7rh5:O, 7rh5:I, 7rh6:O, 7rh6:I, 7rh7:O, 7rh7:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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