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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VVRRELSCESYPIELRCPGTDVIMIESANYGRTDDKICDSDPAQMENIRCYLPDAYKIMSQRCNNRTQCAVVAGPDVFPD
PCPGTYKYLEVQYECVPYKVEQKVFLCPGLLKGVYQSEHLFESDHQSGAWCKDPLQASDKIYYMPWTPYRTDTLTEYSSK
DDFIAGRPTTTYKLPHRVDGTGFVVYDGALFFNKERTRNIVKFDLRTRIKSGEAIIANANYHDTSPYRWGGKSDIDLAVD
ENGLWVIYATEQNNGKIVISQLNPYTLRIEGTWDTAYDKRSASNAFMICGILYVVKSVYEDDDNEATGNKIDYIYNTDQS
KDSLVDVPFPNSYQYIAAVDYNPRDNLLYVWNNYHVVKYSLDFGPLDG

The query sequence (length=368) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ftt:G 368 368 1.0000 1.0000 1.0000 0.0 5afb:A, 5cmn:E, 5cmn:F, 5cmn:G, 5cmn:H, 5ftt:C, 5ftt:D, 5ftt:H, 5ftu:C, 5ftu:D, 5ftu:G, 5ftu:H, 5ftu:K, 5ftu:L, 4rmk:A, 4rml:A, 4yeb:A
2 6ska:D 347 362 0.7201 0.7637 0.7320 0.0 2jxa:A
3 6qm3:A 268 258 0.2935 0.4030 0.4186 8.45e-64 6qhj:A, 6qm3:B, 4xat:A
4 6ou1:A 260 244 0.2717 0.3846 0.4098 1.25e-60 8frr:A, 6ou1:B, 7sib:A, 7sij:A, 7sjt:A, 7sju:A, 7sjv:A, 7sjw:A, 7skd:A, 7ske:A, 7skf:A, 7skg:A, 7t8d:A, 4wxq:A, 4wxs:A, 4wxu:A
5 6nax:A 259 243 0.2636 0.3745 0.3992 2.38e-57 6nax:B
6 5h4s:A 284 90 0.1005 0.1303 0.4111 1.79e-13
7 5h4s:A 284 97 0.1114 0.1444 0.4227 3.62e-13
8 5h4s:A 284 98 0.1060 0.1373 0.3980 7.02e-12
9 2zx2:A 195 106 0.1005 0.1897 0.3491 2.32e-13 2zx2:B, 2zx3:A, 2zx3:B, 2zx4:A, 2zx4:B
10 2zx2:A 195 90 0.0951 0.1795 0.3889 6.32e-12 2zx2:B, 2zx3:A, 2zx3:B, 2zx4:A, 2zx4:B
11 3vyw:D 306 64 0.0625 0.0752 0.3594 0.42 3vyw:A, 3vyw:B, 3vyw:C
12 4v4c:A 875 139 0.0842 0.0354 0.2230 1.0 4v4c:C, 4v4c:E, 4v4c:G, 4v4c:I, 4v4c:K, 4v4c:M, 4v4c:O, 4v4c:Q, 4v4c:S, 4v4c:U, 4v4c:W, 4v4d:A, 4v4d:C, 4v4d:E, 4v4d:G, 4v4d:I, 4v4d:K, 4v4d:M, 4v4d:O, 4v4d:Q, 4v4d:S, 4v4d:U, 4v4d:W, 4v4e:A, 4v4e:C, 4v4e:E, 4v4e:G, 4v4e:I, 4v4e:K, 4v4e:M, 4v4e:O, 4v4e:Q, 4v4e:S, 4v4e:U, 4v4e:W
13 1wb7:A 205 94 0.0815 0.1463 0.3191 4.9 1wb7:B, 1wb8:A, 1wb8:B
14 3ano:B 175 49 0.0462 0.0971 0.3469 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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