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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGALGAI
GLVTILSVVLTMYGVASFEDGAPSTAPSLTLTGRKKEADKLQTAEGWAQFTGGFFFGGVSGAIWAYFLLYVLDLPYFFK

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8htu:L 163 159 0.7610 0.7423 0.7610 3.57e-88 7ksq:L, 7kux:L, 6l35:L, 7xqp:L
2 5zji:L 166 158 0.9057 0.8675 0.9114 6.05e-86 8bcv:L, 8bcw:L, 7ew6:L, 7ewk:L, 7f9o:L, 7f9o:o
3 8wgh:L 162 159 0.8176 0.8025 0.8176 9.55e-86
4 4rku:L 163 156 0.7862 0.7669 0.8013 4.46e-74 7dkz:L, 8j6z:L, 8j7a:L, 8j7b:L, 5l8r:L, 3lw5:L, 7wfe:BL, 7wg5:BL, 4xk8:L, 4xk8:l, 4y28:L, 6yac:L, 6yez:L, 6zoo:L, 6zxs:L
5 2o01:L 164 159 0.7673 0.7439 0.7673 7.64e-74 7wfd:AL, 7wg5:AL, 2wsc:L, 2wse:L, 2wsf:L
6 6zzx:L 157 159 0.5786 0.5860 0.5786 2.22e-54 6zzy:L
7 7d0j:L 159 161 0.5472 0.5472 0.5404 6.17e-54 7bgi:L, 7blx:L, 7dz7:L, 7dz8:L, 8h2u:L, 7zq9:L, 7zqc:L, 7zqd:L, 7zqd:L2
8 7yca:L 158 157 0.5535 0.5570 0.5605 1.47e-53
9 6igz:L 155 154 0.5535 0.5677 0.5714 1.96e-52
10 6sl5:L 155 152 0.5220 0.5355 0.5461 6.74e-52
11 7a4p:L 140 159 0.5472 0.6214 0.5472 4.26e-49
12 8wm6:L 151 148 0.4654 0.4901 0.5000 6.01e-45 8wmj:L, 8wmv:L, 8wmw:L
13 5oy0:L 157 154 0.4403 0.4459 0.4545 5.30e-44 8am5:l, 8asl:l, 8asp:l, 6hqb:L, 4l6v:L, 4l6v:l, 4l6v:8, 6nwa:L, 6nwa:U, 6nwa:l, 5oy0:l, 5oy0:0, 7umh:L, 7umh:U, 7umh:l, 6uzv:L, 6uzv:0, 6uzv:l
14 7y7b:L 150 148 0.4403 0.4667 0.4730 9.01e-44 7y8a:L
15 7y5e:LN 140 148 0.4403 0.5000 0.4730 1.37e-43 7y5e:L2, 7y7a:L7, 7y7a:Lo
16 7fix:L1 152 149 0.4277 0.4474 0.4564 9.24e-43 4fe1:L, 7fix:L2, 7fix:L3, 1jb0:L, 6k33:aL, 6k33:bL, 6k33:cL, 6lu1:L, 7m75:L, 7m76:L, 7m78:L, 3pcq:L, 6pfy:L, 6pfy:h, 6pfy:U, 6pgk:L, 6pgk:h, 6pgk:U, 6tra:L, 6trc:L, 6trc:l, 6trc:0, 6trd:L, 6trd:l, 6trd:0, 5zf0:L1, 5zf0:L2, 5zf0:L3, 5zf0:L4, 5zf0:L6, 5zf0:L5
17 6fos:L 140 148 0.4277 0.4857 0.4595 8.72e-42 7blz:L, 5zgb:L, 5zgh:L
18 6tcl:L2 167 154 0.4528 0.4311 0.4675 1.80e-40 6jeo:aL, 6jeo:bL, 6jeo:cL, 6jeo:dL, 6k61:L, 6k61:l, 6tcl:L1, 6tcl:LL, 6tcl:L
19 7qco:L 150 151 0.4277 0.4533 0.4503 4.16e-40 7qco:S, 7qco:s, 7qco:l
20 6jo5:L 118 136 0.4403 0.5932 0.5147 2.63e-39 6ijj:L, 6ijo:L, 6jo6:L, 7zq9:L2
21 8cmo:L 123 134 0.4528 0.5854 0.5373 2.71e-38
22 6kif:L 164 142 0.4214 0.4085 0.4718 5.68e-37 6kif:n, 6kif:V, 6kig:L, 6kig:n, 6kig:V
23 7lx0:U 163 155 0.3711 0.3620 0.3806 3.74e-35 7lx0:L, 7lx0:l, 6pnj:L, 6pnj:U, 6pnj:l
24 6ly5:l 144 150 0.4340 0.4792 0.4600 1.24e-34
25 6kmx:aL 172 151 0.4025 0.3721 0.4238 1.86e-33 6kmx:bL, 6kmx:cL
26 8wey:L 121 134 0.3648 0.4793 0.4328 2.85e-33
27 7dr0:L 131 139 0.3836 0.4656 0.4388 2.30e-32 7dr1:L, 7dr2:aL, 7dr2:bL, 7dr2:cL, 7dr2:dL
28 6l4u:L 137 148 0.4277 0.4964 0.4595 8.26e-32
29 7y3f:1 466 141 0.3774 0.1288 0.4255 2.38e-31
30 6vpv:L 160 143 0.4277 0.4250 0.4755 1.82e-30 6vpv:l, 6vpv:0
31 7coy:aL 147 146 0.3836 0.4150 0.4178 3.03e-30 7coy:cL, 7coy:bL, 7dwq:L
32 7s3d:L 170 155 0.3648 0.3412 0.3742 2.87e-29 7s3d:l, 7s3d:U
33 6kmw:aL 144 139 0.3648 0.4028 0.4173 3.68e-29 6kmw:cL, 6kmw:bL
34 7f4v:aL 129 91 0.2579 0.3178 0.4505 8.11e-20 7f4v:cL, 7f4v:bL
35 8jjr:l 253 153 0.3082 0.1937 0.3203 8.37e-16
36 8jw0:l 253 137 0.2642 0.1660 0.3066 2.73e-15
37 8jze:l 250 153 0.3208 0.2040 0.3333 3.61e-15 8jzf:l
38 7aor:aa 1558 64 0.1384 0.0141 0.3438 0.86
39 2yjg:A 418 59 0.1132 0.0431 0.3051 5.2 2yjg:B
40 5m5k:C 471 91 0.1572 0.0531 0.2747 6.5 6exi:A, 6exi:B, 6exi:C, 6exi:D, 4lvc:A, 4lvc:B, 4lvc:C, 4lvc:D, 5m5k:A, 5m5k:B, 5m5k:D, 5m65:A, 5m65:B, 5m66:A, 5m66:B, 5m66:C, 5m66:D, 5m67:A, 5m67:B, 5m67:C, 5m67:D
41 6tcv:B 397 44 0.1069 0.0428 0.3864 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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