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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VVLPVARAGLAATAKKNQYMGTSVAPEIVLTDKGSDMSRKVKTEDKKVAADQAAAMGILANMSLYASLNPVKRMTYKAKE
QAPAYVKKTGNPVEDFYPSSWRNMAPVISLSANRVAVAFEKIDAASNGVKANSNNKPFWKSGATTKNYVAPEAPAQSEPE
TLDDAAYQRYFPARIRNKAPAMEFRRPSFANTEDPSAYFMLQKETVPLRMALAEKLLTKLGRKGDG

The query sequence (length=226) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7y4l:KA 226 226 1.0000 1.0000 1.0000 1.12e-166 7ezx:E5, 7ezx:E8, 7lix:A, 7y4l:UA, 7y5e:KB, 7y5e:UB, 7y7a:KW, 7y7a:KA, 7y7a:UA, 7y7a:UW
2 7ezx:O3 375 109 0.1637 0.0987 0.3394 5.48e-05 7ezx:OO, 6kgx:b1, 6kgx:o1, 6kgx:b4, 6kgx:o4, 7liz:A, 7y4l:Y7, 7y4l:b7, 7y5e:YP, 7y5e:bP, 7y7a:YL, 7y7a:bL, 7y7a:bU, 7y7a:YU
3 4v4o:F 529 106 0.1372 0.0586 0.2925 0.82 4v4o:A, 4v4o:B, 4v4o:C, 4v4o:D, 4v4o:E, 4v4o:G, 4v4o:a, 4v4o:b, 4v4o:c, 4v4o:d, 4v4o:e, 4v4o:f, 4v4o:g
4 5z56:L 342 108 0.1150 0.0760 0.2407 2.2 5z57:L, 5z58:L
5 7y4l:WA 139 34 0.0619 0.1007 0.4118 6.8 7ezx:D5, 7ezx:D8, 7liy:A, 7y4l:cA, 7y5e:WB, 7y5e:cB, 7y7a:WA, 7y7a:cA, 7y7a:WW, 7y7a:cW
6 5zl6:A 372 102 0.0973 0.0591 0.2157 6.8 5zl6:B, 5zl6:C, 5zl6:D
7 5v4t:A 212 67 0.0885 0.0943 0.2985 8.7 5v4t:B
8 8ro2:L 555 116 0.1239 0.0505 0.2414 9.4 7abi:L
9 6id0:L 475 116 0.1239 0.0589 0.2414 9.4 6id1:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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