Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKKKNITRPFEDQTSLEFFSKKSD
CSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIENFVSLKDIKNSKCPEGTKPMLIFAGDDFDVTEDYRRLKSLLIDF
FRGPTVSNIRLAGLEYVLHFTALNGKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKLSMKMPKAL
KPKKKKNISHDTFGTTYGRIHMQKQDLSKL

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fl0:ND 270 270 1.0000 1.0000 1.0000 0.0 8ir1:T, 8ir3:T
2 8pv1:Cf 285 275 0.4444 0.4211 0.4364 2.04e-69 8i9r:Cy, 7ozs:C, 8pv2:Cf, 8pv3:Cf, 8pv4:Cf, 8pv5:Cf, 8pv7:Cf, 8pvk:Cf, 8pvl:Cf
3 7uoo:v 293 275 0.4519 0.4164 0.4436 1.09e-65 5a53:C, 7bt6:v, 7btb:v, 6ft6:v, 3jct:v, 6m62:v, 7oh3:v, 7ohq:v, 7oht:v, 7ug6:v, 7uqb:v, 7uqz:v, 7v08:v
4 8fkp:SO 307 106 0.1148 0.1010 0.2925 1.96e-06 8fkq:SO, 8fkr:SO, 8fks:SO, 8fkt:SO, 8fku:SO, 8fkv:SO, 8fkw:SO, 8fkx:SO, 8fky:SO
5 7nac:A 266 121 0.1185 0.1203 0.2645 0.002 6c0f:b, 6cb1:b, 8e5t:b, 6elz:A, 6em1:A, 6em3:A, 6em4:A, 7ohr:A, 7ohs:A, 7ohv:A, 7ohw:A, 7r7a:A, 8v83:A, 8v84:A, 8v87:A, 5z3g:a
6 8i9p:CA 260 145 0.1333 0.1385 0.2483 0.019 8i9r:CA, 8i9t:CA, 8i9v:CA, 8i9w:CA, 8i9x:CA, 8i9y:CA, 8i9z:CA, 8ia0:CA
7 8eti:A 254 110 0.0926 0.0984 0.2273 0.24 8esq:A, 8esr:A, 8etg:A, 8eth:A, 8eup:A, 8euy:A, 8ev3:A
8 5zwn:U 583 62 0.0556 0.0257 0.2419 5.2 7oqc:D, 7oqe:D
9 6c0f:I 288 131 0.1222 0.1146 0.2519 6.2 6cb1:I, 6em1:x, 6em3:x, 6em4:x, 6em5:x, 7ohs:x, 7ohw:x, 7ohx:x, 8v83:x, 8v84:x, 5z3g:O
10 5ysd:B 389 66 0.0704 0.0488 0.2879 6.4 5ysb:A, 5ysb:B, 5ysd:A, 5yse:A, 5yse:B, 5ysf:A, 5ysf:B
11 7k3p:A 329 51 0.0519 0.0426 0.2745 7.1 7k3p:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218