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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VVKFSYMWTINNFSFCREEMGEVIKSSTFSSKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGE
ETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVV

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3hqi:A 294 134 0.9773 0.4388 0.9627 2.64e-86 7d3d:A, 7d3d:B, 6f8f:D, 6f8g:A, 6f8g:C, 6f8g:D, 6f8g:B, 3hqh:A, 3hqi:B, 3hql:A, 3hql:B, 3hqm:A, 3hqm:B, 3hsv:A, 3hsv:B, 3hu6:A, 3hu6:B, 6i41:A, 6i5p:A, 6i5p:C, 6i5p:E, 6i5p:G, 6i68:A, 6i68:C, 6i68:E, 6i68:G, 6i7a:A, 6i7a:C, 6i7a:E, 6i7a:G, 3ivb:A, 3ivq:A, 3ivq:B, 3ivv:A, 7klz:A, 7klz:B, 7kpk:A, 7lin:A, 7lio:A, 7lio:B, 4o1v:A
2 2f1w:A 144 125 0.2045 0.1875 0.2160 0.014 2foj:A, 2foo:A, 2fop:A, 4jjq:A, 4kg9:A, 3mqr:A, 3mqs:C, 2xxn:A, 4ysi:A, 1yy6:A
3 6jpk:A 409 55 0.1515 0.0489 0.3636 2.6 6jpk:B
4 7pu7:A 1070 65 0.1136 0.0140 0.2308 2.7 5lew:A
5 2r4h:C 98 60 0.1364 0.1837 0.3000 4.0
6 4rpu:A 988 31 0.0909 0.0121 0.3871 4.2 4l3t:A, 4l3t:B, 4nge:A, 4nge:D, 4rpu:B
7 6xov:A 966 31 0.0909 0.0124 0.3871 4.6
8 4wji:A 293 22 0.0682 0.0307 0.4091 6.0
9 8ip8:HB 205 103 0.1970 0.1268 0.2524 6.2 8ipa:HB, 8ipb:HB, 8jiv:CI
10 8iuf:C1 495 50 0.1212 0.0323 0.3200 7.8 8iuj:c1, 8iuj:C1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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