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BioLiP
>protein
VVITARNNGPYHIKGSFRIVTQGGRELPVEQGQAWLCRCGHSLNKPFCDGSHKRVEFDSNL

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3tbm:A 61 61 1.0000 1.0000 1.0000 2.64e-42 3tbm:B
2 3tbo:A 54 59 0.3770 0.4259 0.3898 7.38e-08
3 3tbn:A 87 36 0.2623 0.1839 0.4444 0.001
4 3tbn:A 87 28 0.1967 0.1379 0.4286 0.013
5 6z1p:AV 129 28 0.2295 0.1085 0.5000 0.006
6 3ew0:A 77 22 0.1803 0.1429 0.5000 0.092 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
7 8b6h:EF 188 26 0.1475 0.0479 0.3462 0.13 8b6h:Ef, 8bqs:EF, 8bqs:Ef, 8gym:fs, 8gym:FS, 8gzu:0C, 8gzu:47, 8gzu:fs, 8gzu:FS, 7w5z:FS, 7w5z:fs
8 8b6h:EF 188 23 0.1639 0.0532 0.4348 2.8 8b6h:Ef, 8bqs:EF, 8bqs:Ef, 8gym:fs, 8gym:FS, 8gzu:0C, 8gzu:47, 8gzu:fs, 8gzu:FS, 7w5z:FS, 7w5z:fs
9 7yvz:A 63 17 0.1639 0.1587 0.5882 0.21
10 3fnv:B 68 22 0.1803 0.1618 0.5000 0.33 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
11 6avj:A 92 15 0.1639 0.1087 0.6667 0.48 6avj:B, 6avj:C
12 8hkx:AS5P 204 24 0.1803 0.0539 0.4583 1.1 8hky:AS5P, 8hkz:AS5P, 8hl1:AS5P, 8hl2:AS5P, 8hl3:AS5P, 8hl4:AS5P, 8hl5:AS5P, 8wkp:AS5P, 8wq2:AS5P, 8wq4:AS5P
13 2w8s:B 513 32 0.1967 0.0234 0.3750 4.4 2w8s:A, 2w8s:C, 2w8s:D
14 2p0d:A 107 24 0.1639 0.0935 0.4167 5.4
15 2p0f:A 119 24 0.1639 0.0840 0.4167 6.1 2p0h:A
16 7asm:P 102 22 0.1311 0.0784 0.3636 7.8 7asn:P, 7aso:U, 7asp:P, 6ddd:D, 6ddg:D, 6fxc:AP, 6fxc:BP, 5hkv:O, 5hl7:O, 6hma:P, 5li0:U, 5nd8:U, 5nd9:U, 5ngm:AP, 7nhl:U, 7nhm:U, 5nrg:O, 8p2f:U, 8p2g:U, 8p2h:U, 7p48:P, 6s0x:P, 6s0z:P, 6s12:P, 6s13:P, 6sj6:U, 5t7v:L4, 5tcu:L4, 7ttu:D, 7ttw:D, 4wce:O, 4wf9:O, 4wfa:O, 4wfb:O, 6wqn:D, 6wqq:D, 6wrs:D, 6wru:D, 8y36:P, 8y37:P, 8y38:P, 8y39:P, 6yef:U
17 8pjg:D 203 27 0.1803 0.0542 0.4074 8.7 1fyt:D, 1j8h:D, 6r0e:DDD

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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