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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYIGGEV
FAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAE
YRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSPSVRCSSMS

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6m64:A 203 201 0.9901 0.9852 0.9950 5.55e-153 7co1:A, 7co1:C, 7co1:E, 6m64:C, 6m64:E, 5xod:A, 6zvq:A
2 1dd1:B 249 220 0.4653 0.3775 0.4273 3.74e-53 1dd1:A, 1dd1:C
3 5gom:A 407 57 0.0792 0.0393 0.2807 1.3 5gnr:A, 5gof:A, 5gom:B, 5yew:A, 5yew:B, 5yew:C
4 5goe:A 384 57 0.0792 0.0417 0.2807 1.4 5gns:A, 5gnt:A
5 4nen:A 1063 39 0.0644 0.0122 0.3333 1.9
6 4neh:A 1084 39 0.0644 0.0120 0.3333 2.0 5es4:A, 3k6s:A, 3k71:G
7 3k6s:C 885 39 0.0644 0.0147 0.3333 2.2 5es4:C, 5es4:E, 5es4:G, 3k6s:E, 3k6s:G, 3k71:A, 3k71:C, 3k71:E, 3k72:A, 3k72:C
8 2l8r:A 150 76 0.1040 0.1400 0.2763 4.8 4j5r:A, 4j5r:B, 4j5s:A, 4j5s:B, 4j5s:C, 4j5s:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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