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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAKDNLNIYHGPIFLNA
SLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHT
KKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQF
VLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKF

The query sequence (length=274) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1aod:A 274 274 1.0000 1.0000 1.0000 0.0
2 3v1h:A 306 286 0.2920 0.2614 0.2797 1.97e-22 4f2b:A, 4f2b:B, 4i90:A, 4i9j:A, 4i9t:A, 4rv3:A, 4s3g:A, 3v16:A
3 3ea1:A 296 163 0.2226 0.2061 0.3742 1.21e-19 3ea1:B, 3ea2:A, 3ea2:B, 3ea3:A, 3ea3:B, 1gym:A, 1ptg:A, 6s2a:A, 6s2a:B, 6s2a:C, 1t6m:A, 1t6m:B
4 6ul2:A 526 58 0.0584 0.0304 0.2759 2.7 8tti:A, 8tti:B, 8tti:C, 8tti:D, 8ttj:A, 8ttj:B, 8ttj:C, 8ttj:D, 6ul2:B, 6ul2:C, 6ul2:D
5 4wyw:A 479 51 0.0657 0.0376 0.3529 3.8 8c1n:A, 8c1n:B, 8c2p:A, 2d7s:A, 2e9r:X, 2e9t:A, 2e9t:D, 2e9z:A, 2ec0:A, 2ec0:D, 2f8e:X, 6gvy:A, 4iqx:A, 5jxs:A, 3klv:A, 3kmq:A, 3kms:A, 3kna:A, 3koa:A, 5n95:A, 3nl0:A, 3nma:A, 1wne:A, 4wyl:A, 4wzm:A, 4wzq:A, 4x2b:A
6 5ebz:A 655 57 0.0584 0.0244 0.2807 5.1 5ebz:B, 5ebz:C, 5ebz:D, 5ebz:E, 5ebz:F, 5ebz:G, 5ebz:H, 5ebz:L, 5ebz:I, 5ebz:K, 5ebz:J
7 7aqc:G 175 19 0.0401 0.0629 0.5789 7.0 7aqd:G, 7as8:I, 7as9:I, 8buu:G, 6ha1:G, 6ha8:G, 6htq:G, 3j3v:G, 3j3w:G, 3j9w:BH, 5njt:a, 7o5b:d, 7ope:I, 6ppk:G, 8qcq:G, 7qgu:G, 7qh4:G, 8qpp:d, 7qv1:G, 7qv2:G, 7qv3:G, 8r55:d, 8s1p:G, 8s1u:G, 6tnn:a, 6tpq:a
8 3bob:A 209 121 0.0985 0.1292 0.2231 8.0 3boc:A, 3boe:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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