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BioLiP
>protein
VTRYLRLKAPFAAFRPFQSGSFRSTTPVPSFSAVYGLLLNLAGIEQRQEVEGKVTLIKPKAELPKLAIAIGQVKPSSTSL
INQQLHNYWIAPVRREVLVNLDLIIGLQSPVEFWQKLDQGLKGETVINRYGLPFAGDNNFLFDEIYPIEKPDLASWYCPL
EGACRLTLWIDRENNTQTTIKVFSPSDFRLEPPAKAWQQLPG

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ip0:A 212 226 0.9257 0.8821 0.8274 5.31e-126 8h67:A, 8h7q:A
2 8fcj:A 212 203 0.2574 0.2453 0.2562 4.70e-08 8fcu:A, 8fd2:A, 8fd3:A, 8ff4:A, 8ff5:A
3 1fl6:H 219 72 0.0792 0.0731 0.2222 0.11 1fl6:B
4 1uz8:B 212 115 0.1386 0.1321 0.2435 0.30 1uz8:H
5 1ggi:H 215 56 0.0842 0.0791 0.3036 0.55 1ggi:J
6 6z7z:D 218 73 0.0891 0.0826 0.2466 1.7 6z7y:D, 6z7y:B, 6z7z:B
7 1f4x:H 216 73 0.0891 0.0833 0.2466 2.0 1f4y:H
8 2yvv:A 332 41 0.0792 0.0482 0.3902 2.3
9 6uoe:H 225 81 0.0941 0.0844 0.2346 4.4
10 3uo1:H 216 143 0.1634 0.1528 0.2308 5.7 3uyr:H, 3v4u:H, 3v52:H
11 1igt:B 444 70 0.0842 0.0383 0.2429 6.1 1igt:D, 2otu:B, 2otu:D, 2otu:F, 2otu:H, 2otw:B, 2otw:D, 2qhr:H, 6uqc:C, 6uqc:D, 6uqc:F, 5vaa:A, 5vaa:B, 3zo0:A
12 2hrp:H 226 81 0.0941 0.0841 0.2346 7.2 2hrp:N
13 5esz:A 212 111 0.1238 0.1179 0.2252 7.6
14 6l55:C 170 29 0.0644 0.0765 0.4483 8.0 6kzy:A, 6kzy:B, 6kzy:C, 6kzy:D, 6l55:A, 6l55:B, 6l55:D, 6l55:E, 6l55:F, 6l55:G, 6l55:H, 6l55:I, 6l55:J, 6l55:K, 6l55:L, 6l56:A, 6l56:B, 6l56:C, 6l56:D, 6l56:E, 6l56:F, 6l56:G, 6l56:H, 6l56:I, 6l56:J, 6l56:K, 6l56:L, 6l56:M, 6l56:N, 6l56:O, 6l56:P, 6l56:Q, 6l56:R, 6l56:S, 6l56:T, 6l56:U, 6l56:V, 6l56:W, 6l56:X, 6l58:A, 6l58:C, 6l58:B, 6l58:D
15 8bqd:BT 217 59 0.0842 0.0783 0.2881 8.4 8aaf:w, 8agt:w, 8agu:w, 8agv:w, 8agw:w, 8agx:w, 8agz:w, 8bn3:B, 8bqx:BT, 8eub:E, 8evp:E, 8evq:E, 8evr:E, 8evs:E, 8evt:E, 8ewb:E, 8ewc:E, 6gqb:BA, 6gqv:BA, 8hfr:As, 5it7:qq, 3j0l:B, 3j0o:B, 3j0p:B, 3j0q:B, 3j6x:L1, 3j6y:L1, 3j77:L1, 3j78:L1, 5jcs:I, 8k2d:L1, 8k82:L1, 7nac:a, 2noq:G, 6oig:z, 7r7a:a, 7r7c:a, 6r84:L, 6r86:L, 6r87:L, 6tb3:BT, 6uz7:Bq, 4v4b:BA, 4v6i:BA, 4v7h:BA, 4v7r:BA, 4v7r:DA, 8v83:a, 8v84:a, 8v87:a, 4v91:t, 6woo:q, 6xiq:L1, 7zw0:LB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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