Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VTRKDFDHINLEYSGLEKVNKAVAAGNYDDAAKALLAYYREKSKAREPDFSNAEKPADIRQPIDKVTREMADKALVHQFQ
PHKGYGYFDYGKDINWQMWPVKDNEVRWQLHRVKWWQAMALVYHATGDEKYAREWVYQYSDWARKNPLGLSQDNDKFVWR
PLEVSDRVQSLPPTFSLFVNSPAFTPAFLMEFLNSYHQQADYLSTHYAEQGNHRLFEAQRNLFAGVSFPEFKDSPRWRQT
GISVLNTEIKKQVYADGMQFELSPIYHVAAIDIFLKAYGSAKRVNLEKEFPQSYVQTVENMIMALISISLPDYNTPMFGD
SWITDKNFRMAQFASWARVFPANQAIKYFATDGKQGKAPNFLSKALSNAGFYTFRSGWDKNATVMVLKASPPGEFHAQPD
NGTFELFIKGRNFTPDAGVFVYSGDEAIMKLRNWYRQTRIHSTLTLDNQNMVITKARQNKWETGNNLDVLTYTNPSYPNL
DHQRSVLFINKKYFLVIDRAIGEATGNLGVHWQLKEDSNPVFDKTKNRVYTTYRDGNNLMIQSLNADRTSLNEEEGKVSY
VYNKELKRPAFVFEKPKKNAGTQNFVSIVYPYDGQKAPEISIRENKGNDFEKGKLNLTLTINGKQQLVSVPLEHHH

The query sequence (length=636) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4mmh:A 637 636 0.9969 0.9953 0.9969 0.0 4mmi:A
2 5jmd:A 646 647 0.4513 0.4443 0.4436 0.0 5jmf:A
3 1gkr:A 451 138 0.0535 0.0754 0.2464 3.2 1gkr:B, 1gkr:C, 1gkr:D
4 2fze:A 373 69 0.0346 0.0590 0.3188 4.9 2fze:B, 2fzw:A, 2fzw:B, 8gv3:A, 8gv3:B, 1m6h:A, 1m6h:B, 1m6w:A, 1m6w:B, 1ma0:A, 1ma0:B, 1mc5:A, 1mc5:B, 1mp0:A, 1mp0:B, 3qj5:A, 3qj5:B, 1teh:A, 1teh:B
5 8khv:A 579 55 0.0267 0.0294 0.3091 5.1
6 1deh:A 374 69 0.0299 0.0508 0.2754 5.2 1deh:B, 1hdx:A, 1hdx:B, 1hdy:A, 1hdy:B, 1hdz:A, 1hdz:B, 1hso:A, 1hso:B, 1hsz:A, 1hsz:B, 1ht0:A, 1ht0:B, 1htb:A, 1htb:B, 3hud:A, 3hud:B, 1u3t:A, 1u3t:B, 1u3u:A, 1u3u:B, 1u3v:A, 1u3v:B, 1u3w:A, 1u3w:B
7 2f8j:A 335 85 0.0283 0.0537 0.2118 5.3 2f8j:B, 2f8j:C, 2f8j:D, 1h1c:A, 1h1c:B, 1h1c:C, 1h1c:D, 1uu0:A, 1uu0:B, 1uu0:C, 1uu0:D, 1uu1:A, 1uu1:B, 1uu1:C, 1uu1:D, 1uu2:A, 1uu2:B
8 4ojz:A 706 82 0.0346 0.0312 0.2683 5.8 4nei:A, 4nei:B, 4ojz:B, 4ok2:A, 4ok2:B, 4ok4:A, 4ok4:B
9 2iw3:B 980 67 0.0283 0.0184 0.2687 6.1 7b7d:EF, 2iw3:A, 2iwh:A, 2iwh:B
10 7zr1:A 529 84 0.0425 0.0510 0.3214 7.3 4yke:A, 4yke:B, 7zr1:B
11 3wec:A 401 123 0.0487 0.0773 0.2520 7.5
12 8dgf:A 1541 61 0.0299 0.0123 0.3115 7.7 8dgf:B, 8dgf:C, 8dgf:D
13 6so9:A 112 43 0.0236 0.1339 0.3488 9.8
14 6xk2:A 320 24 0.0220 0.0437 0.5833 9.9 6xk2:B, 6xk2:C, 6xk2:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218