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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VTPQPPDILLGPLFNDVQNAKLFPDQKTFADAVPNSDPLMILADYRMQQNQFDLRHFVNVNFTLPKYVPPEGQSLREHID
GLWPVLTRSTENTEKWDSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRS
YYLSRSQPPFFALMVELLAQHEGDAALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTLLNRYWDDRDTPRPES
WVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVPVDLNSLMFKMEKILARASKAAGDNAM
ANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHKVRNQLTAAALFPLYVNAAAKDRANKMATATKTHLLQPGGLNTTS
VKSGQQWDAPNGWAPLQWVATEGLQNYGQKEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGEYPLQDGFGWTN
GVTLKMLDLICPKEQPCDNVPATR

The query sequence (length=504) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jg0:A 507 506 0.9960 0.9901 0.9921 0.0 2jf4:A, 2jjb:A, 2jjb:B, 2jjb:C, 2jjb:D, 2wyn:A, 2wyn:B, 2wyn:C, 2wyn:D
2 5z66:A 512 505 0.8036 0.7910 0.8020 0.0
3 7eaw:A 560 447 0.3194 0.2875 0.3602 3.99e-76 7eaw:B
4 5n6n:C 698 420 0.2480 0.1791 0.2976 2.48e-43 5m4a:A
5 4wvc:A 413 212 0.0952 0.1162 0.2264 4.90e-06 4wvc:B
6 4wvb:A 394 212 0.0972 0.1244 0.2311 6.83e-06
7 8e4i:B 769 173 0.0794 0.0520 0.2312 0.091 8e3j:A, 8e3j:B, 8e3p:A, 8e3p:B, 8e4i:A, 8e4k:A, 8e4k:B, 8e4z:A, 8e4z:B, 8e5u:A, 8e5u:B, 8e6g:A, 8e6g:B, 8ecw:A, 8ecw:B, 8egv:A, 8egv:B, 8ehp:A, 8ehp:B, 8eid:A, 8eid:B, 8ekn:A, 8ekn:B, 8ele:A, 8ele:B, 8epj:A, 8epj:B, 8epo:A, 8epo:B, 8epr:A, 8epr:B, 8eq7:A, 8eq7:B, 8eqx:A, 8eqx:B, 8er4:A, 8er4:B, 8etl:A, 8etl:B, 8eto:A, 8eto:B, 8eud:A, 8eud:B, 8eur:A, 8eur:B, 8eut:A, 8eut:B, 8eux:A, 8eux:B, 7r6j:A, 7r6j:B, 7rd2:A, 7rd2:B, 7rev:A, 7rev:B, 7t66:A, 7t66:B, 7t68:A, 7t68:B, 7t8v:A, 7t8v:B
8 1v7v:A 779 95 0.0496 0.0321 0.2632 0.26 1v7w:A, 1v7x:A
9 5dwa:A 278 48 0.0337 0.0612 0.3542 0.40 5dwa:B, 5dwb:A, 5dwb:B
10 5mqr:A 1082 76 0.0397 0.0185 0.2632 0.44 5mqs:A
11 2ce7:D 413 53 0.0357 0.0436 0.3396 1.5 2ce7:A, 2ce7:B, 2ce7:E, 2ce7:F, 2cea:A, 2cea:B, 2cea:D, 2cea:E, 2cea:F
12 1x7i:B 238 78 0.0496 0.1050 0.3205 1.9 1x8c:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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