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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VTLTAVKKAFPDALTNAELVAMVSKRLSQFGYHKYNTLLATSLCRDEVTRPLEQDFGEVYGKHFTMGGLAGFPFGGLTGF
GAMAGHIPDGGSCLLIYGSHVGVSWEGKWGTVAGACCGSAVAAAQAVTQAYQDPLDAQQGYVRDMLRPYAATLSEAEDVM
VTLPVSVYDAQQKLVTRILDEGQIAVVGGIQINTPKEMSDFFVVRRFCIRDSSGNMVENFM

The query sequence (length=221) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5b5y:B 241 238 0.9955 0.9129 0.9244 3.14e-158 5b5y:A, 5b5z:A, 5b5z:B, 5b60:A
2 6kfs:A 248 247 0.5339 0.4758 0.4777 1.48e-73
3 5k5w:B 226 209 0.2443 0.2389 0.2584 3.95e-08
4 5b5x:A 225 77 0.1176 0.1156 0.3377 4.38e-06
5 5k5w:A 198 197 0.2262 0.2525 0.2538 5.01e-06
6 7jpo:A 352 44 0.0543 0.0341 0.2727 0.45 7jpr:A, 7jps:A, 5uj7:A, 5uj7:B, 5ujm:A
7 7olc:LE 194 80 0.0814 0.0928 0.2250 3.2 8i9p:LE, 8i9r:LE, 8i9t:LE, 8i9v:LE, 8i9w:LE, 8i9x:LE, 8i9y:LE, 8i9z:LE, 8ia0:LE, 7old:LE, 8oo0:LE, 8pv1:LE, 8pv2:LE, 8pv3:LE, 8pv4:LE, 8pv5:LE, 8pv6:LE, 8pv7:LE, 8pv8:LE, 8pvk:LE, 8pvl:LE, 7z3n:LE, 7z3o:LE
8 7r81:H1 194 80 0.0724 0.0825 0.2000 6.0
9 4hg0:A 232 34 0.0633 0.0603 0.4118 6.2 3nqr:A, 3nqr:B, 3nqr:C, 3nqr:D, 5yz2:A, 5yz2:B
10 3tw4:A 218 46 0.0724 0.0734 0.3478 6.3 3tw4:B
11 7aor:t 226 68 0.0860 0.0841 0.2794 6.6
12 8wch:A 396 80 0.1041 0.0581 0.2875 9.4 8wch:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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