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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VTLAQTDKKGRENKERIFDEVREALDTYRYVWVLHLDDVRTPVLQEIRTSWAGSKLIMGKRKVLQKALGEKREEEYKENL
YQLSKLCSGVTGLLFTDEDVNTVKEYFKSYVRSDYSRPNTKAPLTFTIPEGIVYSRGGQIPAEEDVPMIHSLEPTMRNKF
EIPTKIKAGKITIDSPYLVCTEGEKLDVRQALILKQFGIAASEFKVKVSAYYDNDSSTVESTNIN

The query sequence (length=225) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4v7f:n 236 225 1.0000 0.9534 1.0000 4.51e-169 7bt6:W, 7btb:W, 6elz:W, 6em1:W, 6em5:W, 6ft6:W, 8hfr:Wg, 3jct:W, 5jcs:n, 6m62:W, 6n8j:W, 6n8k:W, 7nac:W, 7of1:W, 7oh3:W, 7ohp:W, 7ohq:W, 7ohr:W, 7oht:W, 7ohu:W, 7ohv:W, 7ohy:W, 7r7a:W, 7u0h:W, 7ug6:W, 7uoo:W, 7uqb:W, 7uqz:W, 7v08:W, 8v83:W, 8v84:W, 8v87:W, 6ylg:W, 6ylh:W, 6ylx:W, 6yly:W, 7z34:W
2 7ohw:W 185 220 0.8000 0.9730 0.8182 4.75e-119
3 7ohs:W 172 207 0.7644 1.0000 0.8309 5.79e-111
4 6n8l:W 133 110 0.4800 0.8120 0.9818 2.27e-76
5 6n8l:W 133 25 0.1111 0.1880 1.0000 8.57e-09
6 8esq:W 215 220 0.4311 0.4512 0.4409 5.76e-62 8esr:W, 8etc:W, 8etg:W, 8etj:W
7 7ohx:W 122 211 0.5200 0.9590 0.5545 1.23e-60
8 8i9t:CF 245 224 0.3911 0.3592 0.3929 2.63e-57 8i9v:CF, 8i9w:CF, 8i9x:CF, 8i9y:CF, 8i9z:CF, 8ia0:CF, 8pv1:CF, 8pv2:CF, 8pv3:CF, 8pv4:CF, 8pv5:CF, 8pv6:CF, 8pv7:CF, 8pv8:CF, 8pvk:CF, 8pvl:CF
9 8idt:J 223 213 0.3556 0.3587 0.3756 3.15e-45 8fkr:SQ, 8fks:SQ, 8fkt:SQ, 8fku:SQ, 8fkv:SQ, 8fkw:SQ, 8fkx:SQ, 8fky:SQ, 8fkz:SQ, 8fl0:SQ, 8fl2:SQ, 8fl3:SQ, 8fl4:SQ, 8fl6:SQ, 8fl7:SQ, 8fl9:SQ, 8idy:J, 8ie3:J, 8ine:J, 8inf:J, 8ink:v, 8ipd:v, 8ipx:v, 8ipy:v, 8ir1:v, 8ir3:v
10 8eti:W 173 210 0.3600 0.4682 0.3857 3.86e-39
11 8fla:SQ 127 103 0.1778 0.3150 0.3883 1.19e-21 8flb:SQ, 8flc:SQ, 8fld:SQ, 8fle:SQ, 8flf:SQ
12 7olc:Ls 189 207 0.2311 0.2751 0.2512 4.05e-12 7old:Ls, 8oo0:Ls, 7z3n:Ls, 7z3o:Ls
13 4v3p:Ls 262 214 0.2400 0.2061 0.2523 2.05e-10 4v7e:Cq
14 4v6x:Cq 280 204 0.2311 0.1857 0.2549 5.96e-09 7a01:K2, 5aj0:AK, 9bdn:ALP0, 9bdp:ALP0, 8bhf:e1, 8bpo:q2, 8btk:Bs, 6d90:s, 6d9j:s, 9f1b:Bs, 9f1c:Bs, 9f1d:Bs, 6frk:6, 6ftg:s, 6fti:s, 6ftj:s, 8g5z:Lq, 8g60:Lq, 8g6j:Lq, 6gz3:AK, 6gz4:AK, 6gz5:AK, 6hcf:s3, 6hcj:t3, 6hcm:s3, 6hcq:t3, 3j7p:q, 3j92:s, 3jag:s, 3jah:s, 3jai:s, 3jaj:q, 3jan:q, 8k2c:Ls, 7ls1:j, 7ls2:j, 5lzs:s, 5lzt:s, 5lzu:s, 5lzv:s, 5lzw:s, 5lzx:s, 5lzy:s, 5lzz:s, 6mtd:s, 6mte:s, 7nwg:t3, 7nwh:s, 7nwi:s, 7o7y:Bs, 7o7z:Bs, 7o80:Bs, 7o81:Bs, 6olg:AK, 7oyd:s, 8p2k:Bs, 8q87:Bs, 6r5q:s, 6r6g:s, 6r6p:s, 6r7q:s, 8scb:s, 6sgc:s2, 6t59:s3, 4v6w:Cq, 8xsx:Ls, 8xsy:Ls, 8xsz:Ls, 8yoo:Ls, 8yop:Ls, 6zm7:Ls, 6zme:Ls, 6zmi:Ls, 6zmo:Ls, 6zvk:K2
15 4v6i:Bs 257 214 0.2400 0.2101 0.2523 5.83e-08 8ccs:DD, 8cdl:DD, 8cdr:DD, 8ceh:DD, 8cf5:DD, 8cg8:DD, 8cgn:DD, 8civ:DD, 8cku:DD, 8cmj:DD, 8eub:VA, 8evq:V, 8evr:V, 8evs:V, 8ewb:V, 6gq1:P0, 6gqb:P0, 6gqv:P0, 3j16:G, 5juo:VA, 5jup:VA, 5jus:VA, 5jut:VA, 5juu:VA, 8k2d:P0, 8k82:P0, 7osa:uL10, 7osm:uL10, 7rr5:P0, 4v7h:B8, 6woo:r, 6xiq:P0, 8y0u:P0
16 5it7:rr 195 211 0.2311 0.2667 0.2464 1.13e-07 6uz7:Br
17 8c3a:P0 107 105 0.1289 0.2710 0.2762 1.90e-07 8c3a:p0, 8cq7:P0, 8cq7:p0, 8cqw:P0, 8cre:P0, 8cre:p0
18 5an9:C 205 211 0.2133 0.2341 0.2275 9.88e-06 5anb:C, 5anc:C, 6qkl:C
19 4v4n:Ak 212 200 0.2044 0.2170 0.2300 2.11e-05 4v6u:Bk
20 4v9f:G 254 200 0.1867 0.1654 0.2100 2.24e-05 2qa4:G
21 5dat:p0 143 103 0.1244 0.1958 0.2718 2.93e-05 8aaf:0, 8agt:0, 8agu:0, 8agv:0, 8agw:0, 8agx:0, 8agz:0, 5apn:q, 5apo:q, 5dge:p0, 5dgf:p0, 5fcj:p0, 5i4l:p0, 6i7o:BU, 6i7o:YU, 3j77:P0, 3j78:P0, 5mei:p0, 5ndg:p0, 5obm:p0, 6r84:r, 6r86:r, 6r87:r, 6sv4:BU, 6sv4:YU, 6sv4:ZU, 6t83:ba, 5tbw:p0, 5tga:p0, 5tgm:p0, 4u3m:p0, 4u3n:p0, 4u3u:p0, 4u4n:p0, 4u4o:p0, 4u4q:p0, 4u4r:p0, 4u4u:p0, 4u4y:p0, 4u4z:p0, 4u50:p0, 4u51:p0, 4u52:p0, 4u53:p0, 4u55:p0, 4u56:p0, 4u6f:p0, 4v7r:DM, 4v8y:Bq, 4v8z:Bq
22 5dc3:p0 143 98 0.1200 0.1888 0.2755 3.32e-05 5dgv:p0, 5fci:p0, 6hhq:p0, 5lyb:p0, 6oig:q, 5on6:p0, 4v88:Dq, 4v8t:q
23 7zjw:Lt 115 95 0.1156 0.2261 0.2737 1.08e-04
24 5d8h:B 207 196 0.2311 0.2512 0.2653 0.023 5d6g:A, 5dar:E
25 5im3:A 874 92 0.1156 0.0297 0.2826 0.78 5im3:B
26 6l8s:A 650 109 0.1244 0.0431 0.2569 1.4 1hc1:A, 1hc1:B, 1hc1:C, 1hc1:D, 1hc1:E, 1hc1:F, 6l8s:B, 6l8s:C
27 6ain:B 395 50 0.0711 0.0405 0.3200 2.6
28 3tnh:A 289 40 0.0622 0.0484 0.3500 3.8
29 2cbz:A 230 39 0.0667 0.0652 0.3846 4.8
30 4gnr:A 348 42 0.0844 0.0546 0.4524 5.6
31 6gej:S 208 84 0.1156 0.1250 0.3095 8.2 6gen:S
32 7ooc:C 203 53 0.0711 0.0788 0.3019 9.8 7p6z:C, 7pah:C, 7pai:C, 7paj:C, 7pak:C, 7pal:C, 7pam:C, 7pan:C, 7pao:C, 7paq:C, 7par:C, 7pas:C, 7ph9:C, 7pha:C, 7phb:C, 7phc:C, 7pi8:C, 7pi9:C, 7pia:C, 7pib:C, 7pic:C, 7pio:C, 7pip:C, 7piq:C, 7pir:C, 7pis:C, 7pit:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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