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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRFVCISDTHSRTDGIQMPYGDILLHTGDFTEL
GLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDKEFMADLVFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYG
APWTPWFNGWGFNLPRGQSLLDKWNLIPEGTDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVRPKLHVFGHIHEG
YGTMTDGYTTYINASTCTVSFQPTNPPIIFDLPNP

The query sequence (length=275) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3rl5:A 279 281 0.9855 0.9713 0.9644 0.0 3rl3:A, 3rl4:A
2 6m77:A 907 53 0.0618 0.0187 0.3208 2.0 7f7q:A, 7f7r:A
3 8d0w:A 298 50 0.0582 0.0537 0.3200 4.7 8d0q:A, 8d0r:A, 8d0s:A, 8d0u:A, 8d0x:A
4 3d03:A 274 108 0.1055 0.1058 0.2685 5.8 3d03:B, 3d03:C, 3d03:D, 3d03:E, 3d03:F, 2dxl:A, 2dxl:B, 2dxn:A, 2dxn:B, 2zo9:B, 2zo9:C, 2zoa:A, 2zoa:B
5 8c8b:A 341 59 0.0618 0.0499 0.2881 7.0 5ahr:A, 4b87:A, 8c8d:A, 8c8s:A, 8cew:A, 8cf0:A, 8cg9:A, 5nzw:A, 5nzx:A, 5nzy:A, 5q1j:A, 5q1k:A, 5q1l:A, 5q1m:A, 5q1n:A, 5q1o:A, 5q1p:A, 5q1q:A, 5q1r:A, 5q1s:A, 5q1t:A, 5q1u:A, 5q1v:A, 5q1w:A, 5q1x:A, 5q1y:A, 5q1z:A, 5q20:A, 5q22:A, 5q23:A, 5q24:A, 5q25:A, 5q26:A, 5q27:A, 5q28:A, 5q29:A
6 4df9:C 405 26 0.0400 0.0272 0.4231 8.3 4df9:A, 4df9:B, 4df9:D, 4df9:E, 4df9:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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