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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VTESQFKDTMSRFPQGVTIITTNCNNELFGFTASSLTSVSLKPPLILFCLNKNSFSINSFQKSDKFAVSILAENQIDISK
HFAKSQPNKFTKIAYELGNKTNCPLINGATCYIECNKYASYDAGDHVIFIGEVINTAIKNDLKPLLYFHKSYTNLQ

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4l82:B 167 156 1.0000 0.9341 1.0000 6.74e-114 4l82:A
2 3rh7:A 292 149 0.3654 0.1952 0.3826 1.76e-29 3rh7:C, 3rh7:D, 3rh7:F
3 8ct0:H 178 157 0.3269 0.2865 0.3248 3.30e-29 8ct0:A, 8ct0:B, 8ct0:C, 8ct0:G, 8ct0:D, 8ct0:E, 8ct0:F
4 2ed4:A 149 150 0.3141 0.3289 0.3267 2.57e-28 2ed4:B
5 1rz0:A 153 151 0.3654 0.3725 0.3775 2.24e-27 1rz0:B, 1rz0:C, 1rz0:D, 1rz0:E, 1rz0:F, 1rz0:G, 1rz0:H, 1rz1:A, 1rz1:B, 1rz1:C, 1rz1:D, 1rz1:E, 1rz1:F, 1rz1:G, 1rz1:H
6 4r82:A 166 111 0.2885 0.2711 0.4054 2.99e-27 4r82:B
7 5zyr:A 306 149 0.3526 0.1797 0.3691 1.68e-26 5zc2:B, 5zc2:A, 5zyr:B
8 5cho:A 165 123 0.2949 0.2788 0.3740 2.76e-25 5cho:C, 5cho:B, 5cho:D, 5cho:E, 5cho:F, 5cho:G, 5cho:H
9 2d38:A 156 150 0.3269 0.3269 0.3400 8.19e-24 2d36:A, 2d37:A
10 4xj2:A 162 143 0.2628 0.2531 0.2867 1.02e-22
11 3pft:B 157 151 0.2436 0.2420 0.2517 2.07e-16 3pft:A
12 3cb0:A 166 160 0.2821 0.2651 0.2750 2.38e-16 3cb0:B, 4ira:A
13 3k87:A 164 155 0.2756 0.2622 0.2774 8.48e-16 3k87:B, 3k88:A, 3k88:B
14 4f07:F 155 149 0.2436 0.2452 0.2550 2.24e-14 4f07:A, 4f07:B, 4f07:C, 4f07:G, 4f07:D, 4f07:E, 4f07:H, 4f07:I, 4f07:J, 4f07:L, 4f07:K
15 1i0r:A 161 137 0.2692 0.2609 0.3066 1.53e-13 1i0s:A
16 1yoa:A 159 149 0.2179 0.2138 0.2282 3.43e-10
17 1eje:A 192 155 0.2051 0.1667 0.2065 1.21e-06
18 2r6v:A 182 131 0.1987 0.1703 0.2366 5.71e-06 3zoc:A, 3zod:A, 3zog:A
19 1usc:A 178 128 0.2115 0.1854 0.2578 1.78e-04 1usc:B, 1usf:A, 1usf:B, 3zoe:A, 3zoe:B, 3zof:A, 3zof:B, 3zoh:A, 3zoh:B, 3zoh:C, 3zoh:D
20 3bnk:B 187 125 0.1538 0.1283 0.1920 0.020 3bnk:A
21 2vs4:A 288 45 0.1026 0.0556 0.3556 1.6 1g8o:A, 1g93:A, 1gwv:A, 1gwv:B, 1gww:A, 1gww:B, 1gx0:A, 1gx0:B, 1gx4:A, 1gx4:B, 2jcj:A, 2jck:A, 1k4v:A, 1k4v:B, 5nrb:A, 5nrb:B, 5nrd:A, 5nrd:B, 5nre:A, 1o7o:A, 1o7o:B, 1o7q:A, 1o7q:B, 2vfz:A, 2vfz:B, 2vs3:A, 2vs3:B, 2vs4:B, 2vs5:A, 2vs5:B, 2vxl:A, 1vzt:A, 1vzt:B, 1vzu:A, 1vzu:B, 1vzx:A, 1vzx:B, 2wgz:A, 2wgz:B
22 4rji:C 555 55 0.1154 0.0324 0.3273 1.9 4rji:A, 4rji:B, 4rji:D, 4rjj:A, 4rjj:B, 4rjj:C, 4rjj:D, 4rjj:E, 4rjj:F, 4rjj:G, 4rjj:H, 4rjk:A, 4rjk:B, 4rjk:C, 4rjk:D, 4rjk:E, 4rjk:F, 4rjk:G, 4rjk:H
23 2d5m:A 183 102 0.1346 0.1148 0.2059 2.0
24 4nea:A 505 25 0.0769 0.0238 0.4800 6.5 5dib:A, 5dib:B, 5dib:C, 5dib:D, 5eyu:A, 5eyu:B, 5eyu:C, 5eyu:D, 5ez4:A, 5ez4:B, 5ez4:C, 5ez4:D, 4mpy:A, 4mpy:B, 4mpy:C, 4mpy:D, 4mpy:E, 4mpy:F, 4mpy:G, 4mpy:H, 4nea:B, 4nea:C, 4nea:D, 4qn2:A, 4qn2:B, 4qn2:C, 4qn2:D, 4qn2:E, 4qn2:F, 4qn2:G, 4qn2:H, 4zwl:A, 4zwl:B, 4zwl:C, 4zwl:D, 4zwl:E, 4zwl:F, 4zwl:G, 4zwl:H, 4zxu:A, 4zxu:B, 4zxu:C, 4zxu:D, 4zxu:E, 4zxu:F, 4zxu:G, 4zxu:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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