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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSERTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQV
YEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLP
KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFK
FDTPVDKLPQL

The query sequence (length=251) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5iy6:M 260 254 1.0000 0.9654 0.9882 0.0 8bvw:M, 8byq:M, 8bz1:M, 7edx:R, 7eg7:R, 7eg8:R, 7eg9:R, 7ega:R, 7egb:R, 7egc:R, 7ena:BA, 7enc:BA, 8gxq:BA, 8gxs:BA, 5iya:M, 7lbm:O, 7nvr:M, 7nvs:M, 7nvt:M, 7nvy:M, 7nvz:M, 7zwd:M, 7zx7:M
2 5iy7:M 310 304 1.0000 0.8097 0.8257 1.42e-178 1c9b:A, 1c9b:E, 1c9b:I, 1c9b:M, 1c9b:Q, 1dl6:A, 5iy8:M, 5iy9:M, 5iyb:M, 5iyc:M, 5iyd:M, 7nvu:M, 7nw0:M, 6o9l:M, 2phg:A, 1rly:A, 8s51:M, 8s52:M, 8s5n:M, 1vol:A, 8wak:R, 8wal:R, 8wan:R, 8wao:R, 8wap:R, 8waq:R, 8war:R, 8was:R, 7zwc:M, 7zx8:M, 7zxe:M
3 7ml4:M 234 231 0.3028 0.3248 0.3290 8.79e-40 5fyw:M, 5fz5:M
4 1d3u:B 201 184 0.2390 0.2985 0.3261 2.76e-35 1ais:B
5 1d3u:B 201 97 0.1514 0.1891 0.3918 1.53e-08 1ais:B
6 8cen:M 310 278 0.3147 0.2548 0.2842 3.58e-32 8ceo:M, 5fmf:P, 6gyk:M, 6gyl:M, 6gym:M, 7ml0:M, 7ml1:M, 7ml2:M, 7o4i:M, 7o4j:M, 7o72:M, 7o73:M, 7o75:M, 5oqj:M, 5oqm:M, 7zs9:M, 7zsa:M, 7zsb:M
7 4v1n:M 299 282 0.3147 0.2642 0.2801 1.17e-31 4bbr:M, 4bbs:M, 4v1o:M
8 6cnb:R 522 209 0.2191 0.1054 0.2632 1.28e-17 8cen:O, 8ceo:O, 6cnc:R, 6cnd:R, 6cnf:R, 6eu0:Y, 6f40:U, 6f41:U, 6f42:U, 6f44:U, 8ffz:H, 5fmf:Q, 5fyw:O, 5fz5:O, 6gyk:O, 6gyl:O, 6gym:O, 7ml0:O, 7ml1:O, 7ml2:O, 7ml4:O, 1ngm:A, 1ngm:E, 1ngm:I, 1ngm:M, 1nh2:A, 7o4i:O, 7o4j:O, 7o72:O, 7o73:O, 7o75:O, 7oh9:K, 7oha:K, 7ohb:K, 5oqj:O, 5oqm:O, 7q5b:Y, 1rm1:A, 5sva:j, 4v1n:O, 4v1o:O, 1ytb:A, 1ytb:B, 1ytf:A, 7z7n:D, 7zb5:D, 7zb5:G, 7zs9:O, 7zsa:O, 7zsb:O
9 6eu0:Z 339 209 0.2151 0.1593 0.2584 4.94e-17 6f40:V, 6f41:V, 6f42:V, 6f44:V, 7q5b:Z
10 8ity:V 361 230 0.2151 0.1496 0.2348 5.79e-12 8iue:V, 8iuh:V, 5n9g:A, 5n9g:F, 4roc:A, 4rod:A, 4roe:A
11 1pft:A 50 37 0.0558 0.2800 0.3784 0.002
12 3k1f:M 185 48 0.0837 0.1135 0.4375 0.003
13 6s6y:D 308 71 0.0837 0.0682 0.2958 0.28 6s6y:L, 6s6y:P
14 8g9t:F 261 101 0.0916 0.0881 0.2277 1.1 8g9t:H
15 8abs:A 394 116 0.1275 0.0812 0.2759 1.7 8abr:A, 5ofq:A, 5ofq:B, 5ofq:C, 5ofq:D
16 1b8t:A 192 61 0.0757 0.0990 0.3115 2.1 1ctl:A
17 7suk:LP 359 34 0.0438 0.0306 0.3235 3.6 5wlc:LP
18 7ajt:JA 812 60 0.0876 0.0271 0.3667 4.0 7d63:RL, 6ke6:RL, 6lqp:RL, 6lqq:RL, 6lqr:RL, 6lqu:RL, 6lqv:RL, 7suk:LX, 6zqb:JA, 6zqc:JA
19 7d4i:B6 377 34 0.0438 0.0292 0.3235 5.0 7ajt:UF, 7d5s:B6, 7d5t:B6, 7d63:B6, 6ke6:B6, 6lqp:B6, 6lqq:B6, 6lqr:B6, 6lqs:B6, 6lqt:B6, 6lqu:B6, 6lqv:B6, 6zqa:UF, 6zqb:UF, 6zqc:UF
20 3vfq:A 375 74 0.0916 0.0613 0.3108 5.5 4d86:A, 5o2d:A, 3q6z:A, 3q71:A
21 5t5h:I 192 41 0.0558 0.0729 0.3415 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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