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BioLiP
>protein
VTALEIENYAFPPTVKPPGSTNNFFLGGAGERGIQIQDKFVKFTAIGVYLQDIAVPYLAEKWKARSAHELTDTVPFFRDI
VTGPFEKFMRVTMILPLTGHQYSEKVSENCVAIWKSLGIYTDEEAKAIDKFVSVFKDETFPPGSSILFTVSPSLTISFSK
DGSIPEVETAVIENKLLSQAVLESMIGAHGVSPAAKQSLASRLSKLF

The query sequence (length=207) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ms8:G 209 208 1.0000 0.9904 0.9952 2.83e-151 6ms8:A, 6ms8:D, 6ms8:E, 6ms8:F
2 5yx4:A 232 210 0.6184 0.5517 0.6095 7.28e-90
3 8v8p:A 211 194 0.5845 0.5735 0.6237 2.94e-85 8v8p:B, 8v8p:C, 8v8p:D
4 1jx0:A 217 209 0.5459 0.5207 0.5407 7.60e-77 1eyq:A, 1eyq:B, 1fm7:A, 1fm7:B, 1fm8:A, 1jep:A, 1jep:B, 1jx1:C
5 5wkr:A 215 209 0.3913 0.3767 0.3876 1.99e-39 5wks:A
6 4dok:A 208 201 0.2802 0.2788 0.2886 2.30e-11
7 4kif:B 339 113 0.1787 0.1091 0.3274 0.067 4kib:A, 4kib:B, 4kic:A, 4kic:B, 4kif:A, 4kig:A, 4kig:B, 4m6x:A, 4m6x:B, 4m6y:A, 4m6y:B, 4m71:A, 4m71:B, 4m72:A, 4m72:B, 4m73:A, 4m73:B, 4m74:A, 4m74:B
8 6tz6:A 361 101 0.1208 0.0693 0.2475 1.6 6tz6:D
9 6fj1:A 253 47 0.0628 0.0514 0.2766 2.0 6fj1:B, 6fj1:C, 3zgp:A
10 5b8i:A 359 133 0.1498 0.0864 0.2331 2.1 6tz7:A
11 6fi9:A 144 32 0.0628 0.0903 0.4062 3.7 6fi9:B, 6fi9:C, 6fi9:D, 6fi9:E, 6fi9:F, 6fi9:G, 6fi9:H
12 4wbc:A 179 36 0.0531 0.0615 0.3056 4.0
13 5z5a:A 148 35 0.0531 0.0743 0.3143 5.5 5z5a:B, 5z5a:C
14 1sks:A 681 40 0.0676 0.0206 0.3500 6.2 1skr:A, 1skw:A, 1sl1:A, 1sl2:A, 1t7p:A, 1tk5:A, 1x9m:A, 1x9s:A, 1x9w:A, 1zyq:A
15 1m6e:X 359 46 0.0580 0.0334 0.2609 7.2
16 6g71:A 393 60 0.0676 0.0356 0.2333 7.3
17 8wqj:A 472 22 0.0483 0.0212 0.4545 7.6 8wqj:B
18 6lcp:A 1140 100 0.1111 0.0202 0.2300 8.8 6lcr:A
19 3zx7:A 296 96 0.1014 0.0709 0.2188 9.5 3zxd:C, 3zxg:A
20 1pj6:A 828 26 0.0580 0.0145 0.4615 9.7 3gsi:A, 1pj5:A, 1pj7:A
21 8pha:A 450 117 0.1449 0.0667 0.2564 9.8 8pha:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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