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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VSLDQAILILVVAAKLGTTVEEAVKRALWLKTKLGVSLDQALRILSAAANTGTTVEEAVKRALKLKTKLGVSLEAALAIL
SAAAQLGTTVEEAVKRALKLKTKLGVDLETAALALLTAAKLGTTVEEAVKRALKLKTKLGVSLIEALHILLTAAVLGTTV
EEAVYRALKLKTKLGVSLLQAAAILILAARLGTTVEEAVKRALKLKTKLGG

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8c3w:A 211 211 1.0000 1.0000 1.0000 1.85e-133
2 6h42:A 393 42 0.0569 0.0305 0.2857 0.19 6h42:B, 6h45:A, 6h45:B, 7nq4:A, 8omr:A
3 3h1q:B 272 89 0.1422 0.1103 0.3371 0.28 3h1q:A
4 5jfm:B 452 41 0.0664 0.0310 0.3415 0.60 6gvs:A, 6gvs:B, 6gvs:C, 6gvs:D, 6gvs:E, 6gvs:F, 6gvs:G, 6gvs:H, 6gvs:I, 6gvs:J, 5jfl:A, 5jfl:B, 5jfl:C, 5jfl:D, 5jfl:E, 5jfl:F, 5jfl:G, 5jfl:H, 5jfm:A, 5jfm:C, 5jfm:D, 5jfm:E, 5jfm:F, 5jfm:G, 5jfm:H, 5jfn:A, 5jfn:B, 5jfn:C, 5jfn:D
5 2zkt:A 330 56 0.0853 0.0545 0.3214 1.3
6 2zkt:A 330 56 0.0806 0.0515 0.3036 8.9
7 5hvn:A 354 96 0.1185 0.0706 0.2604 6.0
8 6x9d:A 1218 69 0.1090 0.0189 0.3333 9.7 8dkq:A, 5kf6:A, 5kf6:B, 5kf7:A, 7my9:A, 7my9:B, 7mya:A, 7mya:B, 7myb:A, 7myb:B, 7myc:A, 7myc:B, 6ufp:A, 6ufp:B, 6vz9:A, 6vz9:B, 8w0k:A, 6x99:A, 6x99:B, 6x9a:A, 6x9a:B, 6x9b:A, 6x9b:B, 6x9c:A, 6x9c:B, 6x9d:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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