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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL
LAANPFGQASASIMAAFM

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ytd:A 102 98 1.0000 0.9608 1.0000 6.58e-70 8yte:A, 8yte:C
2 2iep:A 187 82 0.2143 0.1123 0.2561 0.002 2iep:B
3 5lfu:A 487 98 0.2551 0.0513 0.2551 0.005 5lf5:A, 5lfr:A, 5lfr:B, 5lfv:B, 5lfv:A
4 5oyj:C 223 80 0.2041 0.0897 0.2500 0.006
5 6s9f:B 300 68 0.2245 0.0733 0.3235 0.053 6s9f:A
6 1djs:A 206 64 0.1939 0.0922 0.2969 0.071 3cu1:C, 3cu1:A, 1e0o:B
7 7ok5:A 582 68 0.1939 0.0326 0.2794 0.10 7ok5:B
8 7ok5:A 582 89 0.2449 0.0412 0.2697 3.5 7ok5:B
9 7ok5:A 582 68 0.1735 0.0292 0.2500 7.4 7ok5:B
10 2yd4:A 203 65 0.1939 0.0936 0.2923 0.18
11 2yd1:A 196 64 0.1735 0.0867 0.2656 0.23
12 5k6w:A 475 71 0.2143 0.0442 0.2958 0.24 5k6v:A, 5k6w:B
13 7ysh:D 213 64 0.1939 0.0892 0.2969 0.27 1fq9:C, 1fq9:D, 7ysh:E
14 2yd8:A 198 67 0.1735 0.0859 0.2537 0.30
15 7ysu:C 211 64 0.2041 0.0948 0.3125 1.5 7ysu:E
16 7ysw:C 213 62 0.1735 0.0798 0.2742 2.4 7ysw:E
17 2dv6:A 422 24 0.1122 0.0261 0.4583 3.4 2dv6:B, 2dv6:C, 2dv6:D, 2dv6:E, 2dv6:F
18 3doe:A 189 45 0.1633 0.0847 0.3556 4.0 3dof:A, 4gok:B, 4gok:A, 1ksg:A, 1ksh:A, 1ksj:A
19 2yxl:A 443 27 0.1224 0.0271 0.4444 5.0
20 7za1:E 251 60 0.1735 0.0677 0.2833 6.4 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
21 2w2h:A 263 62 0.1837 0.0684 0.2903 6.9 5l1z:B, 2w2h:B
22 4tvm:A 380 67 0.1837 0.0474 0.2687 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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