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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VSAILVLTSSEASTLERVADLVTAHALYAAHDFCAQAQLAAAELPSRVVARLQEFAWGDMNEGHLLIKGLPQVRSLPPTP
TSNVHAVAATTPMSRYQALINECVGRMIAYEAEGHGHTFQDMVPSAMSAHSQTSLGSAVELELHTEQAFSPLRPDFVSLA
CLRGDPRALTYLFSARQLVATLTTQEIAMLREPMWTTTVDESFLAEGRTFLLGFERGPIPILSGADDDPFIVFDQDLMRG
ISAPAQELQQTVIRAYYAERVSHCLAPGEMLLIDNRRAVHGRSIFAPRFDGADRFLSRSFIVADGSRSRHARSSFGRVVS
ARFS

The query sequence (length=324) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6f2a:C 326 324 1.0000 0.9939 1.0000 0.0 6f2a:A, 6f2a:B, 6f2a:D, 6f2b:A, 6f2b:B, 6f2b:C, 6f2b:D, 6f6j:A, 6f6j:B, 6f6j:C, 6f6j:D
2 2og6:A 323 323 0.3241 0.3251 0.3251 7.07e-37 2og7:A
3 1ds1:A 323 303 0.2901 0.2910 0.3102 1.91e-28 1drt:A, 1dry:A, 1gvg:A
4 6vwq:A 325 299 0.2778 0.2769 0.3010 1.33e-27 6vwr:A
5 6daw:A 342 339 0.2716 0.2573 0.2596 2.41e-24 6daw:B
6 6alm:A 338 322 0.3056 0.2929 0.3075 6.21e-24 6aln:A, 6alo:A, 6alp:A, 6alq:A, 6alr:A, 6dax:A, 6daz:A, 6db2:A, 9eqf:A, 6mp9:A, 2wbo:A, 2wbp:A, 2wbq:A, 6y0n:A, 6y12:A
7 4ne0:A 337 332 0.3025 0.2908 0.2952 1.34e-23 4m25:A, 4m26:A, 4m26:C, 4m26:D, 4m27:A, 4m27:C, 4m27:D, 4m2c:B, 4m2c:C, 4m2c:D, 4m2e:B, 4m2e:C, 4m2e:D, 4m2f:A, 4m2f:C, 4m2f:D, 4m2g:A, 4m2g:C, 4m2g:D, 4m2i:A, 4ne0:C
8 4m25:B 317 319 0.2963 0.3028 0.3009 2.08e-23 4m25:C, 4m25:D, 4m26:B, 4m27:B, 4m2f:B, 4m2g:B, 4m2i:B, 4m2i:C, 4m2i:D, 4ne0:B, 4ne0:D
9 6mp8:A 308 301 0.2870 0.3019 0.3090 1.35e-22
10 7y5f:B 341 285 0.2747 0.2610 0.3123 3.93e-18 7vgn:A, 7y5f:A, 7y5i:A, 7y5i:B, 7y5p:A, 7y5p:B, 7yhe:A, 7yhe:B, 7yw9:A
11 6euo:C 354 297 0.2222 0.2034 0.2424 1.05e-11 6euo:A, 6euo:B, 6euo:D, 6eur:A, 6eur:C, 6eur:D, 6exf:A, 6exf:C, 6exf:D, 6exh:A, 6exh:B, 6exh:C, 6exh:D, 6f9p:A, 6f9p:C, 6f9p:D
12 6eur:B 328 301 0.2191 0.2165 0.2359 7.05e-10 6exf:B
13 7tcl:X 259 176 0.1173 0.1467 0.2159 0.002
14 6f9p:B 289 303 0.2160 0.2422 0.2310 0.005
15 3aer:D 421 84 0.0586 0.0451 0.2262 0.34 3aek:B, 3aek:D, 3aeq:B, 3aeq:D, 3aer:B, 3aes:B, 3aes:D, 3aet:B, 3aet:D, 3aeu:D
16 1nx4:C 250 32 0.0401 0.0520 0.4062 0.92 1nx4:A, 1nx8:A, 1nx8:C
17 2wjy:A 773 82 0.0586 0.0246 0.2317 1.1 2gjk:A, 2gk6:A, 2gk6:B, 2gk7:A, 8rxb:E, 8rxb:A, 8rxb:D, 8rxb:I, 8rxb:L, 8rxb:P, 2wjv:A, 2wjv:B, 2xzo:A
18 4oj8:B 271 32 0.0401 0.0480 0.4062 1.1 1nx4:B, 1nx8:B, 4oj8:A, 4oj8:C
19 6ujd:A 406 63 0.0556 0.0443 0.2857 2.0
20 6npb:B 378 77 0.0679 0.0582 0.2857 2.6 6npb:A, 6npc:A, 6npc:B, 6npd:A, 6npd:B
21 7wkv:A 219 39 0.0432 0.0639 0.3590 7.7 4nj4:A, 4nj4:B, 4nro:A, 4nrp:A, 4nrq:A, 4o7x:A, 4oct:A, 4oct:B, 7v4g:A, 7v4g:B, 7v4g:C, 7wkv:C, 7wkv:E, 7wl0:A, 7wl0:C, 7wl0:E, 7wl0:G, 7wl0:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218