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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VSAAEVVSAQENQTYTYVRCWYRTSHSKDDAATDWKWAKNQDGSDFTIDGYWWSSVSFKNMFYTNTSQNVIRQRCEETLD
LANENADITFFAADNRYSYNHTIWSNDAAMQPDQINKVVALGDSLSDTGNIFNASQWRFPNPNSWFLGHFSNGFVWTEYV
AKAKNLPLYNWAVGTGVGEQVSSYLTYTKLAKNYNPANTLFTLEFGLNDFMNYNRSVPEVKADYAEALIRLTDAGAKNFM
LMTLPDATKAPQFKYSTQEEIETIRAKVLKMNEFIKAQAMYYKAQGYNIALFDTHALFEKLTSAPEEHGFVNASDPCLDI
NRSSSVDYMYTHSLRSECAASGADKFVFWDVTHPTTATHRYVAEKMLESSNNLEEFRF

The query sequence (length=378) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8h0d:A 390 389 1.0000 0.9692 0.9717 0.0 8h09:A, 8h09:B, 8h0a:B, 8h0b:B, 8h0c:A, 8h0c:B, 8h0d:B
2 6jl2:A 401 389 0.7302 0.6883 0.7095 0.0 6jkz:A, 6jl2:B, 6jl2:C
3 8a25:A 289 279 0.2143 0.2803 0.2903 2.90e-26 8a26:A
4 8d8x:A 287 294 0.1878 0.2474 0.2415 3.51e-10 8d8y:A, 8d8y:B, 8d8z:A, 8d8z:B, 6uqw:A, 6uqw:B, 6uqx:A, 6uqx:B, 6uqy:A, 6uqy:B, 6uqz:A, 6uqz:B, 6ur0:A, 6ur0:B, 6ur1:A, 6ur1:B
5 8hwp:A 328 331 0.2196 0.2530 0.2508 1.06e-07 5xtu:A
6 4gby:A 475 88 0.0635 0.0505 0.2727 0.21 4gbz:A, 4gc0:A
7 3uo1:H 216 77 0.0529 0.0926 0.2597 3.0 3uyr:H, 3v4u:H, 3v52:H
8 3tvq:A 152 39 0.0423 0.1053 0.4103 4.0
9 7exz:A 324 42 0.0423 0.0494 0.3810 5.1 7bvr:A, 7bvr:C, 7bvr:E, 7bvr:G, 7exz:C, 7exz:E, 7exz:G, 7xrf:A, 7xrf:C, 7xrf:E, 7xrf:G
10 7pmk:Q 766 57 0.0423 0.0209 0.2807 8.5 7pmn:Q
11 7qhs:G 756 57 0.0423 0.0212 0.2807 8.7 7z13:N, 7z13:Q
12 8kg9:M 812 57 0.0423 0.0197 0.2807 8.7
13 8k2h:B 563 94 0.0556 0.0373 0.2234 9.0 8k2h:A, 8k2i:B, 8k2i:A
14 8p5e:G 825 57 0.0423 0.0194 0.2807 9.6 8kg6:M, 8kg8:M, 8p62:G, 8p63:G
15 3j6b:6 209 42 0.0344 0.0622 0.3095 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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