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BioLiP
>protein
VRYFYDTEFIEDGHTIELISIGVVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLDLEEFLRID
GTDSIELWAWVGAYDHVALCQLWGPMTALPPTVPRFTRELRQLWEDRGCPRMPPRPRDVHDALVDARDQLRRFRLITSTD

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4hec:B 163 160 1.0000 0.9816 1.0000 3.16e-116 4hec:A, 4hvj:A, 4hvj:B, 4oke:A, 4oke:B, 4okj:A, 4okj:B, 4okk:A, 4okk:B, 6s0m:B
2 7aih:S 150 68 0.1313 0.1400 0.3088 0.025 7am2:S, 7ane:S
3 5d6j:A 630 59 0.1125 0.0286 0.3051 0.15 5ey8:A, 5ey8:B, 5ey8:C, 5ey8:D, 5ey8:E, 5ey8:F, 5ey8:G, 5ey8:H, 5icr:A, 5icr:B, 5icr:C, 5icr:D
4 6pxk:K 429 105 0.1625 0.0606 0.2476 0.24 6pxk:I, 6pxk:A, 6pxk:C, 6pxk:E, 6pxl:B, 6pxl:F, 6pxl:G, 6pxl:K
5 5fv7:A 283 85 0.1562 0.0883 0.2941 0.28 5fv7:B
6 7aoi:A3 150 68 0.1062 0.1133 0.2500 1.7 6hiv:A3, 6hix:A3, 6yxx:A3, 6yxy:A3
7 8pjg:D 203 77 0.1250 0.0985 0.2597 1.8 1fyt:D, 1j8h:D, 6r0e:DDD
8 6xu6:DA 350 43 0.0813 0.0371 0.3023 2.3
9 4ori:A 355 32 0.0875 0.0394 0.4375 5.7 1uum:A, 1uum:B, 1uuo:A
10 6cmz:A 462 40 0.0750 0.0260 0.3000 7.2 6cmz:B, 6cmz:C, 6cmz:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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