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BioLiP
>protein
VRTKKVPLDTNHKRFYDAFAQGAGKLDLDRQCVECHHEKPGGIPFPKNHPVKPADGPMRCLFCHKFKLEH

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2czs:A 70 70 1.0000 1.0000 1.0000 3.50e-48 2czs:B
2 7aoe:A 1401 49 0.2429 0.0121 0.3469 0.62 7aoc:A, 7aod:A, 7aod:M
3 8isk:B 848 14 0.1143 0.0094 0.5714 0.79 8isk:A
4 2i6q:A 503 37 0.2286 0.0318 0.4324 1.1 2odp:A
5 6p81:A 440 83 0.3286 0.0523 0.2771 2.4 7az5:A, 7az5:B, 7az5:C, 7az5:D, 7az6:A, 7az7:A, 7az8:A, 7az8:B, 7azc:A, 7azc:C, 7azc:B, 7azc:D, 7azd:A, 7azd:B, 7azd:D, 7azd:C, 7aze:A, 7aze:B, 7azf:A, 7azf:D, 7azf:B, 7azf:C, 7azg:A, 7azg:C, 7azg:B, 7azg:D, 7azg:E, 7azg:G, 7azg:F, 7azg:H, 7azk:A, 7azk:B, 7azk:C, 7azk:D, 7azl:A, 7azl:B, 7azl:C, 7azl:D, 3bep:B, 3bep:A, 8cix:A, 8ciy:A, 8ciz:A, 8ciz:B, 3d1e:A, 3d1f:A, 3d1f:B, 3d1g:A, 3d1g:B, 3f1v:A, 3f1v:B, 6fvl:A, 6fvl:B, 6fvl:C, 6fvl:D, 6fvm:A, 6fvm:B, 5jne:C, 5jne:G, 4k3k:A, 4k3k:B, 4k3l:A, 4k3l:B, 4k3m:A, 4k3m:B, 4k3o:A, 4k3o:B, 4k3p:A, 4k3q:A, 4k3q:B, 4k3r:A, 4k3s:A, 4k74:A, 4k74:B, 5m1s:C, 4mjp:B, 4mjq:A, 4mjq:B, 4mjr:A, 4mjr:B, 4n94:A, 4n94:B, 4n95:A, 4n96:A, 4n96:B, 4n97:A, 4n97:B, 4n98:A, 4n98:B, 4n99:A, 4n99:B, 4n9a:A, 4n9a:B, 1ok7:B, 4ovf:A, 4ovf:B, 4ovg:A, 4ovg:B, 4ovh:A, 8pat:A, 8pay:A, 4pnu:A, 4pnu:B, 4pnv:A, 4pnv:B, 4pnw:A, 4pnw:B, 3q4j:B, 3q4j:C, 3q4j:D, 3q4j:E, 3q4j:F, 3q4k:A, 3q4k:B, 3q4l:A, 3q4l:B, 3qsb:A, 3qsb:B, 3v62:A, 3v62:D, 8var:G
6 3h34:A 70 48 0.2429 0.2429 0.3542 2.5
7 6tby:AAA 320 14 0.1286 0.0281 0.6429 3.0 6tc5:AAA
8 8ujm:B 237 33 0.1714 0.0506 0.3636 4.1 8ujm:A
9 6c0z:A 137 25 0.1429 0.0730 0.4000 5.2 6c0z:C, 6c0z:D
10 8a22:Ah 186 48 0.2000 0.0753 0.2917 7.1 8apn:Ah, 8apo:Ah
11 2paa:A 413 27 0.1143 0.0194 0.2963 8.2
12 2vea:A 500 13 0.1000 0.0140 0.5385 9.7
13 8rch:A 2036 32 0.1571 0.0054 0.3438 9.8 8rch:B, 8rck:B, 8rcn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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