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BioLiP
>protein
VRTCLPCGPGGKGRCFGPSICCGDELGCFVGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCSPDGCHEDPACD
P

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2hnu:A 81 81 1.0000 1.0000 1.0000 3.12e-52 2hnu:B, 2hnu:C, 2hnu:D, 2hnu:E, 2hnv:A, 2hnv:B, 2hnv:C, 2hnv:D, 2hnv:E
2 2bn2:A 85 79 0.8519 0.8118 0.8734 9.26e-44 2bn2:C, 2bn2:E, 2bn2:G, 1jk4:A, 1npo:A, 1npo:C
3 4bjh:A 422 33 0.1605 0.0308 0.3939 3.9 3d6n:A
4 6gdd:A 375 33 0.1605 0.0347 0.3939 4.8 6gde:A, 6gdf:A, 1xrf:A, 1xrt:A, 1xrt:B
5 5egc:A 520 23 0.0988 0.0154 0.3478 5.9 3ng9:A, 3ng9:B, 3ng9:C, 3ng9:D, 3ng9:E, 3ng9:F, 3ng9:G, 3ng9:H, 3ng9:I, 3ng9:J, 3oah:A
6 6h25:J 868 27 0.1605 0.0150 0.4815 6.3 6d6q:K, 6d6r:K
7 6u0r:A 527 21 0.1111 0.0171 0.4286 6.4 8fyw:A, 8fyw:B, 8fyw:C, 8fyw:D, 8fyw:E, 8fyw:F, 8fyw:G, 8fyw:H, 8fyw:I, 8fyw:J, 8fyw:K, 8fyw:L, 8fyw:M, 8fyw:N, 8fyw:O, 8fyw:P, 8fyw:Q, 8fyw:R, 8fyw:S, 8fyw:T, 8fyw:U, 8fyw:V, 8fyw:W, 8fyw:X, 8fyw:Y, 8fyw:Z, 8fyw:a, 8fyw:b, 8fyw:c, 8fyw:d, 8fyw:e, 8fyw:f, 8fyw:g, 8fyw:h, 8fyw:i, 8fyw:j, 8fyw:k, 8fyw:l, 8fyw:m, 8fyw:n, 8fyw:o, 8fyw:p, 8fyw:q, 8fyw:r, 8fyw:s, 8fyw:t, 8fyw:u, 8fyw:v, 8fyw:w, 8fyw:x, 8fyw:y, 8fyw:z, 8fyw:1, 8fyw:2, 8fyw:3, 8fyw:4, 8fyw:5, 8fyw:6, 8fyw:7, 8fyw:8, 3j4p:A, 7kfr:A, 7l6h:A, 7l6h:B, 7l6h:C, 7l6h:D, 7l6h:E, 7l6h:F, 7l6h:G, 7l6h:H, 7l6h:I, 7l6h:J, 7l6h:K, 7l6h:L, 7l6h:M, 7l6h:N, 7l6h:O, 7l6h:P, 7l6h:Q, 7l6h:R, 7l6h:S, 7l6h:T, 7l6h:U, 7l6h:V, 7l6h:W, 7l6h:X, 7l6h:Y, 7l6h:Z, 7l6h:a, 7l6h:b, 7l6h:c, 7l6h:d, 7l6h:e, 7l6h:f, 7l6h:g, 7l6h:h, 7l6h:i, 7l6h:j, 7l6h:k, 7l6h:l, 7l6h:m, 7l6h:n, 7l6h:o, 7l6h:p, 7l6h:q, 7l6h:r, 7l6h:s, 7l6h:t, 7l6h:u, 7l6h:v, 7l6h:w, 7l6h:x, 7l6h:y, 7l6h:z, 7l6h:1, 7l6h:2, 7l6h:3, 7l6h:4, 7l6h:5, 7l6h:6, 7l6h:7, 7l6h:8, 6u0r:B, 6u0r:C, 6u0r:D, 6u0r:E, 6u0r:F, 6u0r:G, 6u0r:H, 6u0r:I, 6u0r:J, 6u0r:K, 6u0r:L, 6u0r:M, 6u0r:N, 6u0r:O, 6u0r:P, 6u0r:Q, 6u0r:R, 6u0r:S, 6u0r:T, 6u0r:U, 6u0r:V, 6u0r:W, 6u0r:X, 6u0r:Y, 6u0r:Z, 6u0r:a, 6u0r:b, 6u0r:c, 6u0r:d, 6u0r:e, 6u0r:f, 6u0r:g, 6u0r:h, 6u0r:i, 6u0r:j, 6u0r:k, 6u0r:l, 6u0r:m, 6u0r:n, 6u0r:o, 6u0r:p, 6u0r:q, 6u0r:r, 6u0r:s, 6u0r:t, 6u0r:u, 6u0r:v, 6u0r:w, 6u0r:x, 6u0r:y, 6u0r:z, 6u0r:1, 6u0r:2, 6u0r:3, 6u0r:4, 6u0r:5, 6u0r:6, 6u0r:7, 6u0r:8, 5uf6:A
8 6v10:A 521 35 0.1358 0.0211 0.3143 7.9 7ltm:A, 7ltm:B, 7ltm:C, 7ltm:D, 7ltm:E, 7ltm:F, 7ltm:G, 7ltm:H, 7ltm:I, 7ltm:J, 7ltm:K, 7ltm:L, 7ltm:M, 7ltm:N, 7ltm:O, 7ltm:P, 7ltm:Q, 7ltm:R, 7ltm:S, 7ltm:T, 7ltm:U, 7ltm:V, 7ltm:W, 7ltm:X, 7ltm:Y, 7ltm:Z, 7ltm:a, 7ltm:b, 7ltm:c, 7ltm:d, 7ltm:e, 7ltm:f, 7ltm:g, 7ltm:h, 7ltm:i, 7ltm:j, 7ltm:k, 7ltm:l, 7ltm:m, 7ltm:n, 7ltm:o, 7ltm:p, 7ltm:q, 7ltm:r, 7ltm:s, 7ltm:t, 7ltm:u, 7ltm:v, 7ltm:w, 7ltm:x, 7ltm:y, 7ltm:z, 7ltm:1, 7ltm:2, 7ltm:3, 7ltm:4, 7ltm:5, 7ltm:6, 7ltm:7, 7ltm:8, 3ra4:A, 3ra8:A, 3ra9:A, 3raa:A, 7rl1:A, 7rl1:B, 7rl1:C, 7rl1:D, 7rl1:E, 7rl1:F, 7rl1:G, 7rl1:H, 7rl1:I, 7rl1:J, 7rl1:K, 7rl1:L, 7rl1:M, 7rl1:N, 7rl1:O, 7rl1:P, 7rl1:Q, 7rl1:R, 7rl1:S, 7rl1:T, 7rl1:U, 7rl1:V, 7rl1:W, 7rl1:X, 7rl1:Y, 7rl1:Z, 7rl1:a, 7rl1:b, 7rl1:c, 7rl1:d, 7rl1:e, 7rl1:f, 7rl1:g, 7rl1:h, 7rl1:i, 7rl1:j, 7rl1:k, 7rl1:l, 7rl1:m, 7rl1:n, 7rl1:o, 7rl1:p, 7rl1:q, 7rl1:r, 7rl1:s, 7rl1:t, 7rl1:u, 7rl1:v, 7rl1:w, 7rl1:x, 7rl1:y, 7rl1:z, 7rl1:1, 7rl1:2, 7rl1:3, 7rl1:4, 7rl1:5, 7rl1:6, 7rl1:7, 7rl1:8, 6v10:B, 6v10:C, 6v10:D, 6v10:E, 6v10:F, 6v10:G, 6v10:H, 6v10:I, 6v10:J, 6v10:K, 6v10:L, 6v10:M, 6v10:N, 6v10:O, 6v10:P, 6v10:Q, 6v10:R, 6v10:S, 6v10:T, 6v10:U, 6v10:V, 6v10:W, 6v10:X, 6v10:Y, 6v10:Z, 6v10:a, 6v10:b, 6v10:c, 6v10:d, 6v10:e, 6v10:f, 6v10:g, 6v10:h, 6v10:i, 6v10:j, 6v10:k, 6v10:l, 6v10:m, 6v10:n, 6v10:o, 6v10:p, 6v10:q, 6v10:r, 6v10:s, 6v10:t, 6v10:u, 6v10:v, 6v10:w, 6v10:x, 6v10:y, 6v10:z, 6v10:1, 6v10:2, 6v10:3, 6v10:4, 6v10:5, 6v10:6, 6v10:7, 6v10:8, 6v1g:A, 6v1g:B, 6v1g:C, 6v1g:D, 6v1g:E, 6v1g:F, 6v1g:G, 6v1g:H, 6v1g:I, 6v1g:J, 6v1g:K, 6v1g:L, 6v1g:M, 6v1g:N, 6v1g:O, 6v1g:P, 6v1g:Q, 6v1g:R, 6v1g:S, 6v1g:T, 6v1g:U, 6v1g:V, 6v1g:W, 6v1g:X, 6v1g:Y, 6v1g:Z, 6v1g:a, 6v1g:b, 6v1g:c, 6v1g:d, 6v1g:e, 6v1g:f, 6v1g:g, 6v1g:h, 6v1g:i, 6v1g:j, 6v1g:k, 6v1g:l, 6v1g:m, 6v1g:n, 6v1g:o, 6v1g:p, 6v1g:q, 6v1g:r, 6v1g:s, 6v1g:t, 6v1g:u, 6v1g:v, 6v1g:w, 6v1g:x, 6v1g:y, 6v1g:z, 6v1g:1, 6v1g:2, 6v1g:3, 6v1g:4, 6v1g:5, 6v1g:6, 6v1g:7, 6v1g:8, 6v1z:A, 6v1z:B, 6v1z:C, 6v1z:D, 6v1z:E, 6v1z:F, 6v1z:G, 6v1z:H, 6v1z:I, 6v1z:J, 6v1z:K, 6v1z:L, 6v1z:M, 6v1z:N, 6v1z:O, 6v1z:P, 6v1z:Q, 6v1z:R, 6v1z:S, 6v1z:T, 6v1z:U, 6v1z:V, 6v1z:W, 6v1z:X, 6v1z:Y, 6v1z:Z, 6v1z:a, 6v1z:b, 6v1z:c, 6v1z:d, 6v1z:e, 6v1z:f, 6v1z:g, 6v1z:h, 6v1z:i, 6v1z:j, 6v1z:k, 6v1z:l, 6v1z:m, 6v1z:n, 6v1z:o, 6v1z:p, 6v1z:q, 6v1z:r, 6v1z:s, 6v1z:t, 6v1z:u, 6v1z:v, 6v1z:w, 6v1z:x, 6v1z:y, 6v1z:z, 6v1z:1, 6v1z:2, 6v1z:3, 6v1z:4, 6v1z:5, 6v1z:6, 6v1z:7, 6v1z:8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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