Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VRSKVYQIFLKNAPTREEVLKKVYEHAQQQQGLRKGWQVKAASWVKKIHVDRGDVKVGLRGRDGQFHVIDDLLPKYVVPD
LKNFELKPYVALS

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8a22:AF 93 93 1.0000 1.0000 1.0000 2.89e-64 8apn:AF, 8apo:AF
2 7pkt:E 79 78 0.4839 0.5696 0.5769 1.46e-24
3 6gaw:Be 122 39 0.2151 0.1639 0.5128 1.16e-07 5aj4:Be, 6gb2:Be, 7nqh:Be, 7nql:Be, 7nsh:Be, 7nsi:Be, 7nsj:Be, 8oin:Bq, 8oiq:Bq, 6ydp:Be, 6ydw:Be
4 6xyw:AG 61 35 0.2043 0.3115 0.5429 6.75e-06
5 7a5f:93 109 40 0.1828 0.1560 0.4250 4.50e-05 7a5g:93, 7a5i:93, 7a5k:93, 3j7y:9, 3j9m:9, 6nu2:9, 6nu3:9, 7oic:9
6 8any:9 124 55 0.2043 0.1532 0.3455 9.52e-05 7a5h:9, 7a5j:9, 6i9r:9, 8k2a:Lo, 8k2b:Lo, 7l08:9, 7l20:9, 7o9k:9, 7o9m:9, 7odr:9, 7ods:9, 7odt:9, 7of0:9, 7of2:9, 7of3:9, 7of4:9, 7of5:9, 7of6:9, 7of7:9, 7og4:9, 7oi6:9, 7oi7:9, 7oi8:9, 7oi9:9, 7oia:9, 7oib:9, 7oid:9, 7oie:9, 8oir:Bq, 8oit:Bq, 5ool:9, 5oom:9, 7pd3:9, 8pk0:9, 7po4:9, 7qh6:9, 7qh7:9, 7qi4:9, 7qi5:9, 7qi6:9, 8qsj:9, 8qu5:9, 6vlz:9, 6vmi:9, 8xt0:Lo, 8xt1:Lo, 8xt2:Lo, 8xt3:Lo, 6zm5:9, 6zm6:9, 6zs9:9, 6zsa:9, 6zsb:9, 6zsc:9, 6zsd:9, 6zse:9, 6zsg:9
7 5mrc:3 130 15 0.1290 0.0923 0.8000 0.048 3j6b:3, 5mre:3, 5mrf:3
8 8a22:Bd 221 27 0.1290 0.0543 0.4444 0.35 8apn:Bd, 8apo:Bd
9 6z1p:AI 122 35 0.1505 0.1148 0.4000 0.97
10 1gtt:A 421 32 0.1075 0.0238 0.3125 1.1 1gtt:B, 1gtt:C, 1gtt:D, 1i7o:A, 1i7o:B, 1i7o:C, 1i7o:D
11 6ywe:3 95 16 0.0968 0.0947 0.5625 2.3 6yws:3, 6ywv:3, 6ywx:3, 6ywy:3
12 6rxt:UG 479 59 0.1720 0.0334 0.2712 2.6 5oql:F, 6rxu:UG, 6rxv:UG, 6rxx:UG, 6rxy:UG, 6rxz:UG
13 3cg1:A 293 70 0.1935 0.0614 0.2571 7.1 3cg1:B
14 4kg0:A 157 32 0.1183 0.0701 0.3438 8.0
15 5v93:l 123 45 0.1828 0.1382 0.3778 8.5 8crx:L, 8cwo:L, 6dzi:u, 6dzk:L, 8fr8:n, 7kgb:l, 7msc:l, 7msh:l, 7msm:l, 7msz:l, 7mt2:l, 7mt3:l, 7mt7:l, 5o5j:L, 5o61:BL, 7sfr:l, 8v9j:l, 8v9k:l, 8v9l:l, 8whx:m, 8wi7:m, 8wi9:m, 8wib:m, 8wid:m, 8wif:m, 5xyu:L, 5zeb:l, 5zep:l, 5zeu:l

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218