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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VRPRLIAELARRVRALREQLNRPRDSQLYAVDYETLTRPFSGRRLPVRAWADVRRESRLLQLLGRLPLFGLGRLVTRKSW
LWQHDEPCYWRLTRVRPDYTAQNLDHGKAWGILTFKGKTESEAREIEHVMYHDWRLVPKHEEEAFTAFTPAPEDSLASVP
YPPLLRAMIIAERQKNGDTSTEEPMLNVQRIRMEPWDYPAKQEDKGRAKGT

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8any:A0 215 211 1.0000 0.9814 1.0000 4.38e-156 8csp:0, 8csq:0, 8csr:0, 8css:0, 8cst:0, 8csu:0, 7l08:A0, 8oir:Aj, 8ois:Aj, 7p2e:0, 7pnx:0, 7pny:0, 7pnz:0, 7po0:0, 7po1:0, 7po2:0, 7po3:0, 7qi4:A0, 7qi5:A0, 7qi6:A0, 8qrk:0, 8qrl:0, 8qrm:0, 8qrn:0, 6rw4:0, 6rw5:0, 6vlz:A0, 6vmi:A0, 6zm5:A0, 6zm6:A0
2 7pnt:0 216 211 0.8910 0.8704 0.8910 4.08e-131 7a5f:a6, 7a5g:a6, 7a5i:a6, 7a5k:a6, 3j9m:A0, 8k2a:Sj, 6nu2:A0, 6nu3:A0, 7og4:A0, 7pnu:0, 7pnv:0, 7pnw:0, 8xt0:Sj, 8xt2:Sj, 6zs9:A0, 6zsa:A0, 6zsb:A0, 6zsc:A0, 6zsd:A0, 6zse:A0, 6zsg:A0
3 3jd5:j 213 208 0.8294 0.8216 0.8413 2.37e-128 6neq:j, 6nf8:j
4 5aj3:j 213 209 0.8246 0.8169 0.8325 1.37e-116 5aj4:Aj, 6gaw:Aj, 6gaz:Aj, 7nqh:Aj, 7nql:Aj, 7nsi:Aj, 7nsj:Aj, 8oin:Aj, 8oip:Aj, 6ydp:Aj, 6ydw:Aj
5 7aor:t 226 136 0.1469 0.1372 0.2279 0.017
6 7pub:Cj 227 113 0.1185 0.1101 0.2212 0.12 6hiv:Cj, 6hiw:Cj, 6hiy:Cj, 7pua:Cj, 6sga:Cj, 6sgb:Cj
7 7pkq:z 85 53 0.0853 0.2118 0.3396 0.14
8 6xyw:By 76 84 0.0995 0.2763 0.2500 0.16
9 7ane:t 226 109 0.1327 0.1239 0.2569 0.75
10 2gep:A 472 61 0.0995 0.0445 0.3443 1.6 1aop:A, 2aop:A, 3aop:A, 4aop:A, 5aop:A, 6c3m:A, 6c3x:A, 6c3y:A, 6c3z:A, 4g39:A, 3geo:A, 4gep:A, 5gep:A, 6gep:A, 7gep:A, 8gep:A
11 4g38:A 449 61 0.0995 0.0468 0.3443 1.6 4htr:A
12 1f76:A 336 38 0.0758 0.0476 0.4211 2.0 1f76:B, 1f76:D, 1f76:E, 7t5k:A, 7t5k:B, 7t5y:A, 7t5y:B, 7t6c:A, 7t6c:B, 7t6h:A, 7t6h:B
13 3qkt:A 339 101 0.1090 0.0678 0.2277 3.5 4ncj:C, 4ncj:D, 3qkt:C
14 8ro2:C 908 76 0.0900 0.0209 0.2500 4.5 7aav:r, 7abf:r, 7abg:r, 7abi:r, 6ah0:C, 6ahd:C, 8c6j:C, 8ch6:b, 7dvq:C, 6ff4:B, 6ff7:B, 9fmd:C, 8h6e:5C, 8h6j:5C, 8h6k:5C, 8h6l:5C, 8i0p:C, 8i0r:C, 8i0s:C, 8i0t:C, 8i0u:C, 8i0v:C, 8i0w:C, 6icz:C, 6id0:C, 6id1:C, 8q7q:C, 8q7v:C, 8q7w:C, 8q7x:C, 8q91:C, 6qdv:C, 8qp8:C, 7qtt:b, 6qw6:5C, 6qx9:5C, 8rc0:C, 7w59:C, 7w5a:C, 7w5b:C, 5xjc:C, 8y6o:D, 5yzg:C, 5z56:C, 5z57:C, 5z58:C, 6zym:B
15 3qxe:A 201 58 0.0853 0.0896 0.3103 4.7 3qxe:C, 3qxe:E, 3qxe:G, 3qyg:A, 3qyg:C, 3qyg:E, 3qyg:G, 3qyh:A, 3qyh:C, 3qyh:E, 3qyh:G, 3qz5:A, 3qz5:C, 3qz5:E, 3qz5:G, 3qz9:A, 3qz9:C, 3qz9:E, 3qz9:G
16 5veu:L 448 59 0.0806 0.0379 0.2881 4.9 7lad:A, 8sg5:H, 7sv2:D, 5veu:E
17 5veu:C 469 59 0.0806 0.0362 0.2881 5.0 6mjm:A, 8sg5:A, 8sg5:B, 8sg5:C, 8sg5:D, 8sg5:E, 8sg5:F, 8sg5:G, 7sv2:A, 7sv2:B, 7sv2:C, 5veu:A, 5veu:B, 5veu:D, 5veu:F, 5veu:G, 5veu:H, 5veu:I, 5veu:J, 5veu:K
18 4ob3:A 204 58 0.0853 0.0882 0.3103 6.9 9d6k:A, 8i6n:A, 1ire:A, 4ob0:A, 4ob1:A, 4ob2:A, 1ugp:A, 1ugr:A, 1ugs:A, 3vyh:A, 7w8l:A, 7w8m:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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