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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VRIRRAGLEDLPGVARVLVDTWRATYRGVVPEAFLEGLSYEGQAERWAQRLKTPTWPGRLFVAESESGEVVGFAAFGPDR
ASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKL
WEVAYGFDLGGHKW

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2cy2:A 174 174 1.0000 1.0000 1.0000 3.46e-122
2 3f0a:A 159 145 0.1897 0.2075 0.2276 1.08e-09 3k9u:A, 3k9u:B, 3ne7:A
3 5t7e:D 175 145 0.2356 0.2343 0.2828 9.32e-06 5t7d:A, 5t7d:B, 5t7d:C, 5t7d:D, 5t7e:A, 5t7e:B, 5t7e:C
4 1tiq:A 173 163 0.1897 0.1908 0.2025 3.31e-05 1tiq:B
5 7ovv:B 196 83 0.1724 0.1531 0.3614 9.46e-05 7ovv:A
6 8iyo:D 163 102 0.1494 0.1595 0.2549 2.67e-04 8iyo:A, 8iyo:B, 8iyo:C
7 7daj:B 150 81 0.1264 0.1467 0.2716 5.18e-04 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B
8 2j8m:A 171 149 0.2299 0.2339 0.2685 6.02e-04 2bl1:A, 2j8m:B, 2j8r:A, 2j8r:B
9 6zmp:A 190 151 0.2241 0.2053 0.2583 0.001 6zmp:B
10 6yug:A 143 135 0.1724 0.2098 0.2222 0.009 6yug:B
11 4jxr:B 185 146 0.2586 0.2432 0.3082 0.011
12 3dr8:A 173 91 0.1609 0.1618 0.3077 0.012 3dr8:B
13 4jwp:A 165 112 0.2011 0.2121 0.3125 0.017
14 7wx5:A 288 56 0.1149 0.0694 0.3571 0.021 7wx6:A, 7wx7:A
15 2bei:A 156 71 0.1207 0.1346 0.2958 0.032 2q4v:A
16 2cnm:A 151 56 0.1149 0.1325 0.3571 0.032 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D
17 4rs2:B 183 90 0.1379 0.1311 0.2667 0.045 4rs2:A
18 4mbu:A 165 131 0.2471 0.2606 0.3282 0.11 4mbu:B
19 3zj0:A 202 63 0.1552 0.1337 0.4286 0.19
20 3gy9:A 149 97 0.1609 0.1879 0.2887 0.52 3gya:A
21 6c95:B 160 64 0.0920 0.1000 0.2500 0.70 6ppl:C, 6pw9:C
22 4zbg:A 154 93 0.1724 0.1948 0.3226 0.77
23 8heh:B 147 94 0.1494 0.1769 0.2766 0.86 8heh:A
24 4kvm:E 153 82 0.1207 0.1373 0.2561 0.86 4kvm:F, 4kvm:G, 4kvm:H, 4kvo:E, 4kvo:F, 4kvo:G, 4kvo:H, 4kvx:A, 4kvx:B
25 2pr1:A 152 20 0.0690 0.0789 0.6000 1.3 2pr1:B
26 1ghe:B 171 113 0.1724 0.1754 0.2655 1.5 1ghe:A, 1j4j:A, 1j4j:B
27 6b3t:A 396 65 0.1379 0.0606 0.3692 1.5 6b0u:A, 6b0u:B, 6b0u:C, 8d1r:A, 8d23:A, 8d25:A, 5ebv:A, 5ec4:A, 8f4a:A, 8f4t:A, 8f4u:A, 8f4w:A, 8f4z:A, 8f51:A, 8f55:A, 8f57:A, 8f58:A, 5iv0:A, 4jd6:A, 4jd6:B, 4jd6:C, 4jd6:D, 4jd6:E, 4jd6:F, 6p3t:A, 6p3u:A, 6p3v:A, 3r1k:A, 3ryo:A, 3ryo:B, 3ryo:C, 3ryo:D, 3ryo:E, 3ryo:F, 3ryo:G, 3ryo:H, 3ryo:I, 3ryo:J, 3ryo:K, 3ryo:L, 5tvj:A, 6vur:A, 6vus:A, 6vut:A, 6vuu:A, 6vuw:A, 6vux:A, 6vuy:A, 6vuz:A, 6vv0:A, 6vv1:A, 6vv2:A, 6vv3:A, 6x10:A, 6x6g:AAA, 6x6i:AAA, 6x6y:AAA, 6x7a:AAA
28 5wph:A 179 106 0.1724 0.1676 0.2830 1.7 6m7g:A, 6m7g:C, 6m7g:B, 6m7g:D, 6m7g:E, 6m7g:F, 6m7g:L, 5wph:B
29 6lf2:B 131 94 0.1322 0.1756 0.2447 2.2 6lf2:A
30 2jlm:F 180 51 0.0977 0.0944 0.3333 2.5
31 7ad3:F 318 38 0.0690 0.0377 0.3158 2.8
32 2ge3:A 164 49 0.0805 0.0854 0.2857 3.0 2ge3:B, 2ge3:C
33 5f47:B 152 52 0.0747 0.0855 0.2500 3.5 5f47:A, 5f48:A, 5f48:B, 5f49:A, 5f49:B, 5f49:C, 5f49:D, 5u08:A, 5u08:B, 5u08:C, 5u08:D
34 7zkt:B 202 98 0.1724 0.1485 0.3061 4.2 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
35 8g0l:A 158 89 0.1207 0.1329 0.2360 5.3 7stx:A, 6vp9:A
36 8ajq:A 132 67 0.1207 0.1591 0.3134 5.4 8ajq:B, 8ajq:C, 8ajq:D, 8ajq:E, 8ajq:F, 8ajq:G, 8ajq:H
37 8ate:A 502 79 0.1322 0.0458 0.2911 6.2
38 8dd5:A 272 29 0.0747 0.0478 0.4483 6.5 1m36:A, 2ozu:A, 2rc4:A
39 2pia:A 321 40 0.0747 0.0405 0.3250 7.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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