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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VRFKHRYLLCELVSDDPRCRLSLDDRVLSSLVRDTIARVHGTFGAAACSIGFAVRYLNAYTGIVLLRCRKEFYQLVWSAL
PFITYLENKGHRYPCFFNTLHVGGTIRTCQKFLIQYNRRQLLILLQNCTDEGEREAIQKSVTRSCLL

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ahr:E 147 147 1.0000 1.0000 1.0000 1.49e-107 6ahu:E
2 6w6v:E 169 143 0.2449 0.2130 0.2517 1.20e-05 6agb:E, 6ah3:E, 7c79:E, 7c7a:E
3 6c1q:B 374 27 0.0952 0.0374 0.5185 0.81 6c1r:B, 5o9h:A, 5o9h:B, 7y65:D, 7y66:D, 7y67:D
4 7mk3:B 365 67 0.1293 0.0521 0.2836 3.8 7mk2:A, 7mk2:B, 7mk3:A, 7tac:A, 7tac:B, 7tad:A, 7tad:B
5 8kgg:R 290 29 0.0816 0.0414 0.4138 4.1
6 8d8j:d 660 70 0.1224 0.0273 0.2571 5.4 8d8k:d
7 7xv3:R 289 48 0.1088 0.0554 0.3333 6.8 8izb:R, 8kh5:A
8 8hnk:R 297 32 0.0816 0.0404 0.3750 7.4 8hnl:R, 8hnm:R, 8hnn:R, 8k2w:R, 8k2x:R
9 3fim:B 565 34 0.0816 0.0212 0.3529 9.9 5oc1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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