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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VRAESIVAKTLATSREKERIKRVSILEDKKAKNETQHIASGKDFILKEKTTYDGKPALLFIVRVRGPLAVNIPNKAFKIL
SLLRLVETVKLTKNVYPLLKVIAPYVVPSLSSIRSLIQKRGRIIYKAEPHEIVLNDNNIVEEQLGDHGIICVEDIIHEIA
TMGESFSVCNFFLVSGFGSLNRLRKIKQREAESNAATAPVIE

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ohx:t 202 202 1.0000 1.0000 1.0000 1.05e-146
2 6elz:t 290 235 1.0000 0.6966 0.8596 1.78e-130 7btb:t, 6c0f:t, 8e5t:t, 6em1:t, 6em3:t, 6em4:t, 6em5:t, 3jct:t, 6m62:t, 7nac:t, 7ohp:t, 7ohq:t, 7ohr:t, 7ohs:t, 7ohv:t, 7ohw:t, 7r6q:t, 7r7a:t, 7u0h:t, 7uoo:t, 7uqb:t, 7uqz:t, 7v08:t, 8v83:t, 8v84:t, 8v87:t, 6ylx:t, 6yly:t, 5z3g:D
3 6cb1:t 282 235 1.0000 0.7163 0.8596 4.25e-130
4 5it7:FF 222 178 0.3317 0.3018 0.3764 2.35e-24 6uz7:AF
5 8euy:F 240 217 0.3762 0.3167 0.3502 7.29e-24 8esq:F, 8esr:F, 8etc:F, 8etg:F, 8eth:F, 8eti:F, 8etj:F, 8eug:F, 8eui:F, 8eup:F, 8ev3:F
6 7qiw:I 239 180 0.3317 0.2803 0.3722 8.82e-24 8azw:q, 8b2l:q3, 7qiz:I
7 8c3a:o 234 131 0.2871 0.2479 0.4427 1.24e-23 8c3a:BB, 8cq7:o, 8cq7:BB, 8cqw:o, 8cqw:BB, 8cre:o, 8cre:BB, 8oeq:o, 8oeq:BB, 7pzy:o, 7q08:o, 7q0f:o, 7q0p:o, 7q0r:o, 8q5i:o
8 8pv1:LF 248 181 0.3317 0.2702 0.3702 2.91e-23 8i9p:LF, 8i9p:CM, 8i9r:LF, 8i9r:CM, 8i9t:LF, 8i9t:CM, 8i9v:LF, 8i9v:CM, 8i9w:LF, 8i9w:CM, 8i9x:CM, 8i9x:LF, 8i9y:CM, 8i9y:LF, 8i9z:CM, 8i9z:LF, 8ia0:CM, 8ia0:LF, 7olc:LF, 7old:LF, 8oo0:LF, 8pv1:CM, 8pv2:LF, 8pv3:CM, 8pv3:LF, 8pv4:LF, 8pv4:CM, 8pv5:LF, 8pv6:CM, 8pv6:LF, 8pv7:CM, 8pv7:LF, 8pv8:LF, 8pvk:CM, 8pvk:LF, 8pvl:CM, 8pvl:LF, 7z3n:LF, 7z3o:LF
9 7oya:F1 222 126 0.2673 0.2432 0.4286 5.64e-23 7oyb:F1
10 6c0f:F 242 177 0.3267 0.2727 0.3729 1.25e-22 8aaf:o, 8agt:o, 8agu:o, 8agv:o, 8agw:o, 8agx:o, 8agz:o, 5apn:F, 5apo:F, 7azy:C, 7b7d:LI, 8bip:LF, 8bjq:LF, 8bn3:L7, 8bqd:BO, 8bqx:BO, 7bt6:F, 7btb:F, 6cb1:F, 8ccs:JJ, 8cdl:JJ, 8cdr:JJ, 8ceh:JJ, 8cf5:JJ, 8cg8:JJ, 8cgn:JJ, 8civ:JJ, 8cku:JJ, 8cmj:JJ, 5dat:L7, 5dat:l7, 5dc3:L7, 5dc3:l7, 5dge:L7, 5dge:l7, 5dgf:L7, 5dgf:l7, 5dgv:L7, 5dgv:l7, 8e5t:F, 6elz:F, 6em1:F, 6em3:F, 6em4:F, 6em5:F, 8eub:AF, 8evp:AF, 8evq:AF, 8evr:AF, 8evs:AF, 8evt:AF, 8ewb:AF, 8ewc:AF, 5fci:L7, 5fci:l7, 5fcj:L7, 5fcj:l7, 6ft6:F, 5gak:J, 6gq1:F, 6gqb:F, 6gqv:F, 5h4p:F, 6hd7:J, 8hfr:Gu, 6hhq:o, 6hhq:CI, 5i4l:L7, 5i4l:l7, 6i7o:BO, 6i7o:YO, 3j6x:L7, 3j6y:L7, 3j77:L7, 3j78:L7, 3jct:F, 5jcs:F, 5juo:K, 5jup:K, 5jus:K, 5jut:K, 5juu:K, 8k2d:LF, 8k82:LF, 5lyb:L7, 5lyb:l7, 5m1j:F5, 6m62:F, 5mc6:BO, 5mei:o, 5mei:CI, 7mpi:AF, 7mpj:AF, 6n8j:F, 6n8k:F, 6n8l:F, 6n8m:I, 6n8n:I, 6n8o:I, 7n8b:AF, 7nac:F, 5ndg:L7, 5ndg:l7, 5ndv:L7, 5ndv:l7, 5ndw:L7, 5ndw:l7, 7nrc:LI, 7nrd:LI, 5obm:L7, 5obm:l7, 7of1:F, 7oh3:F, 7ohp:F, 7ohq:F, 7ohr:F, 7ohs:F, 7oht:F, 7ohu:F, 7ohv:F, 7ohw:F, 7ohx:F, 7ohy:F, 6oig:F, 5on6:o, 5on6:CI, 7osa:uL30, 7osm:uL30, 8p8m:LK, 8p8n:LK, 8p8u:LK, 8pfr:LK, 6q8y:BO, 6qik:b, 6qt0:b, 6qtz:b, 7r7a:F, 6r84:J, 6r86:J, 6r87:J, 6ri5:b, 7rr5:LF, 6rzz:b, 6s05:b, 6s47:AI, 6snt:m, 6sv4:BO, 6sv4:YO, 6sv4:ZO, 6t4q:LF, 5t62:I, 5t6r:I, 6t7i:LF, 6t7t:LF, 6t83:Fy, 6t83:Ia, 5tbw:o, 5tbw:CI, 6tb3:BO, 5tga:L7, 5tga:l7, 5tgm:L7, 5tgm:l7, 6tnu:BO, 7too:AL07, 7top:AL07, 7u0h:F, 4u3m:L7, 4u3m:l7, 4u3n:L7, 4u3n:l7, 4u3u:L7, 4u3u:l7, 4u4n:L7, 4u4n:l7, 4u4o:L7, 4u4o:l7, 4u4q:L7, 4u4q:l7, 4u4r:L7, 4u4r:l7, 4u4u:L7, 4u4u:l7, 4u4y:L7, 4u4y:l7, 4u4z:L7, 4u4z:l7, 4u50:L7, 4u50:l7, 4u51:L7, 4u51:l7, 4u52:L7, 4u52:l7, 4u53:L7, 4u53:l7, 4u55:L7, 4u55:l7, 4u56:L7, 4u56:l7, 4u6f:L7, 4u6f:l7, 7ug6:F, 7uoo:F, 7uqb:F, 7uqz:F, 7v08:F, 4v4b:BF, 4v6i:Be, 4v7r:BG, 4v7r:DG, 4v88:BF, 4v88:DF, 4v8t:F, 4v8y:BF, 4v8z:BF, 8v83:F, 8v84:F, 8v87:F, 4v91:F, 6woo:F, 6xiq:F, 6xir:F, 8y0u:LF, 6ylg:F, 6ylh:F, 6ylx:F, 6yly:F, 5z3g:J, 7z34:F, 6z6j:LF, 6z6k:LF, 7zpq:BF, 7zrs:BF, 7zs5:BH, 7zuw:BF, 7zux:EF, 7zw0:LJ
11 7oyc:F1 227 126 0.2574 0.2291 0.4127 1.89e-22
12 8q7z:BF 234 126 0.2624 0.2265 0.4206 3.36e-22 8q87:BF
13 4v7h:BF 213 126 0.2772 0.2629 0.4444 1.06e-21
14 8fkp:SD 239 126 0.2574 0.2176 0.4127 6.70e-21 7a01:U2, 8a3d:m, 5aj0:AF, 8b5l:F, 8b6c:F, 9bdl:AL07, 9bdn:AL07, 9bdp:AL07, 7bhp:LF, 8bhf:o3, 8bpo:F2, 8btk:BF, 7cpu:LF, 7cpv:LF, 4d5y:F, 4d67:F, 6d90:F, 6d9j:F, 9f1b:BF, 9f1c:BF, 9f1d:BF, 7f5s:LF, 8fkq:SD, 8fkr:SD, 8fks:SD, 8fkt:SD, 8fku:SD, 8fkv:SD, 8fkw:SD, 8fkx:SD, 8fky:SD, 8fkz:SD, 8fl0:SD, 8fl2:SD, 8fl3:SD, 8fl4:SD, 8fl6:SD, 8fl7:SD, 8fl9:SD, 8fla:SD, 8flb:SD, 8flc:SD, 8fld:SD, 8fle:SD, 8flf:SD, 6frk:F, 6ftg:F, 6fti:F, 6ftj:F, 8g5y:LF, 8g5z:LF, 8g60:LF, 8g61:LF, 8g6j:LF, 8glp:LF, 6gz3:AF, 6gz4:AF, 6gz5:AF, 6hcf:F3, 6hcj:F3, 6hcm:F3, 6hcq:F3, 8idt:p, 8idy:p, 8ie3:p, 8ifd:2A, 8ife:2A, 8ine:p, 8inf:p, 8ink:p, 6ip5:2A, 6ip6:2A, 6ip8:2A, 8ipd:p, 8ipx:p, 8ipy:p, 8ir1:p, 8ir3:p, 3j7o:F, 3j7p:F, 3j7q:F, 3j7r:F, 3j92:F, 3jag:F, 3jah:F, 3jai:F, 3jaj:F, 3jan:F, 8jdj:L, 8jdk:L, 8jdl:L, 8jdm:L, 8k2c:LF, 5lks:LF, 6lqm:w, 6lsr:w, 6lss:p, 7ls1:A1, 7ls2:A1, 6lu8:p, 5lzs:F, 5lzt:F, 5lzu:F, 5lzv:F, 5lzw:F, 5lzx:F, 5lzy:F, 5lzz:F, 7mdz:F, 6mtb:F, 6mtc:F, 6mtd:F, 6mte:F, 7nfx:F, 7nwg:F3, 7nwh:F, 7nwi:F, 7o7y:BF, 7o7z:BF, 7o80:BF, 7o81:BF, 7obr:F, 8ohd:LF, 8oj0:LF, 8oj5:LF, 8oj8:LF, 6ole:H, 6olf:H, 6olg:AF, 6oli:H, 6olz:AF, 6om0:H, 6om7:H, 7ow7:m, 7oyd:F, 8p2k:BF, 6p5i:AF, 6p5j:AF, 6p5k:AF, 6p5n:AF, 8qfd:F, 7qgg:H, 8qoi:LF, 7qvp:LF, 7qvp:MF, 7qwq:F, 7qwr:F, 7qws:F, 6qzp:LF, 6r5q:F, 6r6g:F, 6r6p:F, 6r7q:F, 8rjb:F, 8rjc:F, 8rjd:F, 8scb:F, 6sgc:F2, 6swa:F, 5t2c:m, 6t59:F3, 7tm3:F, 7toq:AL07, 7tor:AL07, 7tut:F, 7ucj:F, 7uck:F, 4ug0:LF, 4ujc:BF, 4ujd:AF, 4uje:CF, 4v5z:Bw, 4v6x:CF, 6w6l:H, 6xa1:LF, 7xnx:LF, 7xny:LF, 8xsx:LF, 8xsy:LF, 8xsz:LF, 6y0g:LF, 8y0w:LF, 8y0x:LF, 6y2l:LF, 6y57:LF, 6y6x:LF, 8yoo:LF, 8yop:LF, 6z6l:LF, 6z6m:LF, 6z6n:LF, 7zjw:LI, 7zjx:LI, 6zm7:LF, 6zme:LF, 6zmi:LF, 6zmo:LF, 6zvk:U2
15 4v3p:Le 244 129 0.2723 0.2254 0.4264 9.03e-21 8ip8:CB, 8ipa:CB, 8ipb:CB, 8jiv:CF, 4v7e:CF
16 8esq:t 235 181 0.3119 0.2681 0.3481 1.14e-20 8esr:t, 8etg:t, 8eth:t, 8eti:t, 8ev3:t
17 8fru:F 221 181 0.2921 0.2670 0.3260 2.32e-20 8br8:LH, 8brm:LH, 8bsi:LH, 8bsj:LH, 8btd:LH, 8btr:LH, 7pwg:F, 7pwo:F2
18 9bh5:CF 213 120 0.2475 0.2347 0.4167 5.53e-19 9cai:CF
19 7r81:I1 247 181 0.3168 0.2591 0.3536 6.47e-18
20 8fl2:SI 234 97 0.2030 0.1752 0.4227 5.31e-17 8fkp:SI, 8fkq:SI, 8fkr:SI, 8fks:SI, 8fkt:SI, 8fku:SI, 8fkv:SI, 8fkw:SI, 8fkx:SI, 8fky:SI, 8fkz:SI, 8fl3:SI, 8fl6:SI, 8fl7:SI, 8fla:SI, 8flb:SI, 8fld:SI, 8fle:SI, 8ine:3, 8inf:3, 8ipx:1, 8ipy:1, 8ir3:3
21 4v6w:CF 229 169 0.2673 0.2358 0.3195 4.08e-16 6xu6:CF, 6xu7:CF, 6xu8:CF
22 4v8m:Bw 257 146 0.2228 0.1751 0.3082 3.72e-15 8ova:Bw, 8ove:Bw
23 8ovj:c 229 122 0.1931 0.1703 0.3197 8.98e-15 8a3w:c, 8a98:c, 6az3:c, 3jcs:c, 8rxh:Lc, 8rxx:Lc, 5t2a:u
24 4v8p:BV 234 122 0.2228 0.1923 0.3689 9.06e-15 4v8p:CV, 4v8p:EV, 4v8p:GV
25 6zj3:Lr 218 126 0.2030 0.1881 0.3254 1.07e-13
26 5t5h:w 215 122 0.1931 0.1814 0.3197 2.01e-13
27 5xxb:F 250 105 0.2079 0.1680 0.4000 3.53e-13
28 3j79:5 223 129 0.1980 0.1794 0.3101 1.12e-11 3jbn:A5, 3jbo:A5, 3jbp:A5, 8tpu:A5, 5umd:5
29 5xy3:F 231 139 0.2277 0.1991 0.3309 3.86e-10
30 6rm3:LF0 230 122 0.1832 0.1609 0.3033 1.30e-04
31 8p5d:LF0 231 138 0.2129 0.1861 0.3116 0.002 8p60:LF0, 8p60:KF0, 7qca:LF0
32 7qep:L7 231 112 0.1584 0.1385 0.2857 0.015
33 5xrs:G 321 76 0.0990 0.0623 0.2632 0.74 5xrs:A, 5xrs:C
34 8tj8:A 317 76 0.1040 0.0662 0.2763 1.2
35 6wzt:A 494 76 0.0990 0.0405 0.2632 1.3 6aos:A, 6aot:A, 6aou:A, 6aov:A, 6bkr:A, 6bks:A, 6bkt:A, 6cex:D, 6cex:B, 3eym:B, 3eym:D, 3eym:F, 8faw:A, 1hgg:B, 1hgg:D, 1hgg:F, 1hgh:B, 1hgh:D, 1hgh:F, 1htm:B, 1htm:D, 1htm:F, 6nsa:A, 6nsb:A, 6nsf:A, 6nsg:A, 5t6n:B, 5t6n:D, 5t6n:F, 8tj6:B, 8tj9:A, 8tja:A, 8tjb:A, 4uny:D, 4uo0:D, 8uwa:B, 4wea:A, 2yp3:A, 2yp4:A, 2yp5:A, 2yp8:A, 2yp9:A
36 7lvl:A 296 126 0.1485 0.1014 0.2381 2.6 7lvl:B, 7lvl:C, 7lvl:E, 7lvl:D, 7lvl:F, 7mjf:A, 7mjf:B, 7mjf:C, 7mjf:D, 7mjf:E, 7mjf:F
37 6ql9:D 1765 59 0.0941 0.0108 0.3220 2.9 3hmj:A, 3hmj:B, 3hmj:C, 8prv:A, 8prv:B, 8prw:A, 8prw:B, 8prw:C, 8prw:D, 8prw:E, 8prw:F, 8ps1:A, 6ql6:F, 6ql6:E, 6ql6:D, 6ql6:C, 6ql6:B, 6ql6:A, 6ql9:F, 6ql9:A, 6ql9:E, 6ql9:B, 6ql9:C, 6ta1:A, 6ta1:B, 6ta1:D, 6ta1:K, 6ta1:F, 6ta1:I, 6u5u:A, 2vkz:A, 2vkz:B, 2vkz:C, 2wat:A, 2wat:B, 2wat:C, 2wat:D, 2wat:E, 2wat:F
38 8tj4:A 317 71 0.0990 0.0631 0.2817 4.8 8tj4:C, 8tj4:E, 8tj4:G, 8tj6:A, 8tj6:C, 8tj6:E, 8tj6:G, 8tj7:A
39 5lu4:A 850 45 0.0644 0.0153 0.2889 4.9 5lu4:B
40 5jvl:A 874 45 0.0644 0.0149 0.2889 4.9 5jvj:A, 5jvl:C, 5jvl:D, 5jvn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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