Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VQTKHFTLKSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKG
IPSDKISARGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIEVKG

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4rha:A 131 127 0.9843 0.9542 0.9843 2.06e-88 4rha:B, 5ves:B
2 6top:A 154 94 0.3150 0.2597 0.4255 1.66e-20 6top:B, 6top:C, 6top:D
3 5u1h:C 123 123 0.3622 0.3740 0.3740 1.20e-15 5u1h:A, 5u1h:B, 5u1h:D
4 7rjj:A 120 120 0.3465 0.3667 0.3667 1.39e-11 7rjj:B
5 7muc:BL 173 122 0.2677 0.1965 0.2787 5.50e-11 7muc:CL, 7muc:EL, 7muc:FL, 7muc:GL, 7muc:HL, 7muc:IL, 7muc:JL, 7muc:KL, 7muc:LL, 7muc:AL, 7mud:BL, 7mud:CL, 7mud:DL, 7mud:EL, 7mud:FL, 7mud:GL, 7mud:HL, 7mud:IL, 7mud:JL, 7mud:KL, 7mud:LL, 7mud:ML, 7mud:AL, 7muq:HL, 7muq:IL, 7muq:JL, 7muq:KL, 7muq:LL, 7muq:ML, 7muq:AL, 7muq:BL, 7muq:CL, 7muq:DL, 7muq:EL, 7muq:FL, 7muq:GL, 7mus:HL, 7mus:IL, 7mus:JL, 7mus:KL, 7mus:LL, 7mus:ML, 7mus:AL, 7mus:BL, 7mus:CL, 7mus:DL, 7mus:EL, 7mus:FL, 7mus:GL, 7muv:FL, 7muv:GL, 7muv:HL, 7muv:IL, 7muv:JL, 7muv:KL, 7muv:LL, 7muv:ML, 7muv:AL, 7muv:BL, 7muv:CL, 7muv:DL, 7muv:EL, 7muw:FL, 7muw:GL, 7muw:HL, 7muw:IL, 7muw:JL, 7muw:KL, 7muw:LL, 7muw:ML, 7muw:AL, 7muw:BL, 7muw:CL, 7muw:DL, 7muw:EL, 7muy:FL, 7muy:GL, 7muy:HL, 7muy:IL, 7muy:JL, 7muy:KL, 7muy:LL, 7muy:ML, 7muy:AL, 7muy:BL, 7muy:CL, 7muy:DL, 7muy:EL
6 6u83:A 154 97 0.2835 0.2338 0.3711 5.76e-11
7 4g4v:A 111 114 0.2835 0.3243 0.3158 1.23e-09 4g4w:A, 4g4x:A
8 4pwt:C 123 98 0.2598 0.2683 0.3367 3.07e-08
9 5wtl:C 260 114 0.2835 0.1385 0.3158 8.54e-08 5wtl:A, 5wtl:B, 5wtl:D
10 2aiz:P 134 86 0.2441 0.2313 0.3605 2.27e-07
11 5lkw:A 119 93 0.2205 0.2353 0.3011 2.34e-05 5lkw:B, 5n2c:A, 5n2c:B, 5n2c:C
12 3oon:A 113 52 0.1339 0.1504 0.3269 0.004
13 7muq:GK 151 82 0.1654 0.1391 0.2561 0.005 7muq:LK, 7muq:MK, 7muq:BK, 7muq:DK, 7mus:GK, 7mus:HK, 7mus:IK, 7mus:JK, 7mus:LK, 7mus:AK, 7muv:EK, 7muv:FK, 7muv:HK, 7muv:IK, 7muv:MK, 7muv:BK, 7muw:EK, 7muw:GK, 7muw:JK, 7muw:KK, 7muw:LK, 7muw:MK, 7muw:BK, 7muy:FK, 7muy:GK, 7muy:IK, 7muy:AK, 7muy:BK
14 7z0s:G 250 47 0.1339 0.0680 0.3617 1.7 7z0t:G
15 3ulk:A 489 75 0.1496 0.0389 0.2533 1.8 3ulk:B
16 3dm5:A 416 89 0.2047 0.0625 0.2921 2.2 3dm5:B
17 7qep:N5 93 46 0.1024 0.1398 0.2826 4.6
18 1zt2:A 327 28 0.0787 0.0306 0.3571 6.0 5of3:A, 5of3:D, 5ofn:A, 1zt2:C
19 1bg1:A 559 38 0.1181 0.0268 0.3947 6.5 4e68:A, 6njs:A, 6nuq:A, 6qhd:A
20 7xld:B 125 41 0.1102 0.1120 0.3415 6.7 7xli:B
21 8b6d:A 291 54 0.1339 0.0584 0.3148 7.7 8b68:A, 8b6d:B
22 6mqs:A 224 56 0.1181 0.0670 0.2679 7.7 6mqs:C, 6p60:A, 6p60:C, 6p60:J, 6p60:G
23 6ifc:A 132 84 0.1575 0.1515 0.2381 8.1 6ifc:C, 6ifc:E, 6ifc:G
24 1b9h:A 384 21 0.0709 0.0234 0.4286 8.1 1b9i:A
25 8kcx:A 571 23 0.0709 0.0158 0.3913 8.4 8kcx:C
26 8woq:A 647 23 0.0709 0.0139 0.3913 8.5 8j6m:B, 8j6m:A, 8jul:A, 8jul:B, 8kcw:A, 8kcw:C, 8woq:B, 8wor:A, 8wor:B, 8wos:A, 8wos:B, 8wot:A, 8wot:B
27 8jun:A 678 23 0.0709 0.0133 0.3913 8.6 8jun:B
28 5d2l:F 238 64 0.1496 0.0798 0.2969 8.7 5d2l:J, 5d2l:P

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218