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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGS
MCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQK

The query sequence (length=114) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7qgg:h 116 114 1.0000 0.9828 1.0000 6.60e-79 7a01:y2, 8a3d:a, 5aj0:Ag, 8b5l:g, 8b6c:g, 9bdl:AL34, 9bdn:AL34, 9bdp:AL34, 7bhp:Lg, 8bhf:T1, 8bpo:f2, 8btk:Bg, 7cpu:Lg, 7cpv:Lg, 4d5y:g, 4d67:g, 6d90:g, 6d9j:g, 9f1b:Bg, 9f1c:Bg, 9f1d:Bg, 7f5s:Lg, 8fky:LR, 8fkz:LR, 8fl2:LR, 8fl3:LR, 8fl4:LR, 8fl6:LR, 8fl7:LR, 8fl9:LR, 8fla:LR, 8flb:LR, 8flc:LR, 8fld:LR, 8fle:LR, 8flf:LR, 6frk:g, 6ftg:g, 6fti:g, 6ftj:g, 8g5y:Lg, 8g5z:Lg, 8g60:Lg, 8g61:Lg, 8g6j:Lg, 8glp:Lg, 6gz3:Ag, 6gz4:Ag, 6gz5:Ag, 6hcf:g3, 6hcj:g3, 6hcm:g3, 6hcq:g3, 8idt:F, 8idy:F, 8ie3:F, 8ifd:2a, 8ife:2a, 8ine:F, 8inf:F, 8ink:F, 6ip5:2a, 6ip6:2a, 6ip8:2a, 8ipd:F, 8ipx:F, 8ipy:F, 8ir1:F, 8ir3:F, 3j7o:g, 3j7p:g, 3j7q:g, 3j7r:g, 3j92:g, 3jag:g, 3jah:g, 3jai:g, 3jaj:g, 3jan:g, 8jdj:l, 8jdk:l, 8jdl:l, 8jdm:l, 8k2c:Lg, 5lks:Lg, 6lqm:F, 6lsr:F, 6lss:F, 7ls1:a2, 7ls2:a2, 6lu8:F, 5lzs:g, 5lzt:g, 5lzu:g, 5lzv:g, 5lzw:g, 5lzx:g, 5lzy:g, 5lzz:g, 7mdz:g, 6mtb:g, 6mtc:g, 6mtd:g, 6mte:g, 7nfx:g, 7nwg:g3, 7nwh:g, 7nwi:g, 7o7y:Bg, 7o7z:Bg, 7o80:Bg, 7o81:Bg, 7obr:g, 8ohd:Lg, 8oj0:Lg, 8oj5:Lg, 8oj8:Lg, 6ole:h, 6olf:h, 6olg:Ag, 6oli:h, 6olz:Ag, 6om0:h, 6om7:h, 7ow7:a, 7oya:g1, 7oyb:g1, 7oyc:g1, 7oyd:g, 8p2k:Bg, 6p5i:Ag, 6p5j:Ag, 6p5k:Ag, 6p5n:Ag, 8q7z:Bg, 8q87:Bg, 8qfd:g, 8qoi:Lg, 7qvp:Lg, 7qvp:Mg, 7qwq:g, 7qwr:g, 7qws:g, 6qzp:Lg, 6r5q:g, 6r6g:g, 6r6p:g, 6r7q:g, 8rjb:g, 8rjc:g, 8rjd:g, 8scb:g, 6sgc:g2, 6swa:e, 5t2c:a, 6t59:g3, 7tm3:g, 7toq:AL34, 7tor:AL34, 7tut:g, 7ucj:g, 7uck:g, 4ug0:Lg, 4ujc:Bg, 4ujd:Ag, 4uje:Cg, 4v6x:Cg, 6w6l:h, 6xa1:Lg, 7xnx:Lg, 7xny:Lg, 8xsx:Lg, 8xsy:Lg, 8xsz:Lg, 6y0g:Lg, 8y0w:Lg, 8y0x:Lg, 6y2l:Lg, 6y57:Lg, 6y6x:Lg, 8yoo:Lg, 8yop:Lg, 6z6l:Lg, 6z6m:Lg, 6z6n:Lg, 7zjw:Lj, 7zjx:Lj, 6zm7:Lg, 6zme:Lg, 6zmi:Lg, 6zmo:Lg, 6zvk:y2
2 8pv1:Lg 118 112 0.5877 0.5678 0.5982 8.98e-39 8i9x:Lg, 8i9y:Lg, 8i9z:Lg, 8ia0:Lg, 7olc:Lg, 7old:Lg, 8oo0:Lg, 8pv2:Lg, 8pv3:Lg, 8pv4:Lg, 8pv5:Lg, 8pv6:Lg, 8pv7:Lg, 8pv8:Lg, 8pvk:Lg, 8pvl:Lg, 7r81:i1, 7z3n:Lg, 7z3o:Lg
3 8esq:g 106 106 0.5439 0.5849 0.5849 1.55e-35 8esr:g, 8etc:g, 8etg:g, 8eug:g, 8eui:g
4 4v6w:Cg 113 112 0.5702 0.5752 0.5804 4.89e-35 6xu6:Cg, 6xu7:Cg, 6xu8:Cg
5 8c3a:AH 112 113 0.5263 0.5357 0.5310 7.56e-34 8c3a:CB, 8cq7:AH, 8cq7:CB, 8cqw:AH, 8cqw:CB, 8cre:AH, 8cre:CB, 8oeq:AH, 8oeq:CB, 7pzy:AH, 7q08:AH, 7q0f:AH, 7q0p:AH, 7q0r:AH, 8q5i:AH
6 6woo:g 121 108 0.5175 0.4876 0.5463 1.88e-32 8aaf:T, 8agt:T, 8agu:T, 8agv:T, 8agw:T, 8agx:T, 8agz:T, 5apn:g, 5apo:g, 7azy:B, 7b7d:Lc, 8bip:Lg, 8bjq:Lg, 8bn3:O4, 8bqd:BN, 8bqx:BN, 7bt6:g, 7btb:g, 6cb1:g, 8ccs:S, 8cdl:S, 8cdr:S, 8ceh:S, 8cf5:S, 8cg8:S, 8cgn:S, 8civ:S, 8cku:S, 8cmj:S, 5dat:O4, 5dat:o4, 5dc3:O4, 5dc3:o4, 5dge:O4, 5dge:o4, 5dgf:O4, 5dgf:o4, 5dgv:O4, 5dgv:o4, 6elz:g, 6em5:g, 8eub:Ag, 8evp:Ag, 8evq:Ag, 8evr:Ag, 8evs:Ag, 8evt:Ag, 8ewb:Ag, 8ewc:Ag, 5fci:O4, 5fci:o4, 5fcj:O4, 5fcj:o4, 6ft6:g, 5gak:i, 6gq1:g, 6gqb:g, 6gqv:g, 5h4p:g, 6hd7:i, 8hfr:g2, 6hhq:AH, 6hhq:DI, 5i4l:O4, 5i4l:o4, 6i7o:BN, 6i7o:YN, 3j6x:74, 3j6y:74, 3j77:84, 3j78:84, 3jct:g, 5jcs:g, 5juo:LA, 5jup:LA, 5jus:LA, 5jut:LA, 5juu:LA, 8k2d:Lg, 8k82:Lg, 5lyb:O4, 5lyb:o4, 5m1j:g5, 6m62:g, 5mc6:BN, 5mei:AH, 5mei:DI, 7mpi:Ag, 7mpj:Ag, 6n8j:g, 6n8k:g, 6n8l:g, 6n8m:t, 6n8n:t, 6n8o:t, 7n8b:Ag, 7nac:g, 7nad:g, 5ndg:O4, 5ndg:o4, 5ndv:O4, 5ndv:o4, 5ndw:O4, 5ndw:o4, 7nrc:Li, 7nrd:Li, 5obm:O4, 5obm:o4, 7of1:g, 7oh3:g, 7ohq:g, 7ohr:g, 6oig:g, 5on6:AH, 5on6:DI, 7osa:eL34, 7osm:eL34, 8p8m:RG, 8p8n:RG, 8p8u:RG, 8pfr:RG, 6q8y:BN, 6qik:g, 6qt0:g, 6qtz:g, 7r72:g, 7r7a:g, 6r84:i, 6r86:i, 6r87:i, 6ri5:g, 7rr5:Lg, 6rzz:g, 6s05:g, 6s47:Ai, 6snt:aj, 6sv4:BN, 6sv4:YN, 6sv4:ZN, 6t4q:Lg, 5t62:t, 5t6r:t, 6t7i:Lg, 6t7t:Lg, 6t83:gy, 6t83:R, 5tbw:AH, 5tbw:DI, 6tb3:BN, 5tga:O4, 5tga:o4, 5tgm:O4, 5tgm:o4, 6tnu:BN, 7too:AL34, 7top:AL34, 7u0h:g, 4u3m:O4, 4u3m:o4, 4u3n:O4, 4u3n:o4, 4u3u:O4, 4u3u:o4, 4u4n:O4, 4u4n:o4, 4u4o:O4, 4u4o:o4, 4u4q:O4, 4u4q:o4, 4u4r:O4, 4u4r:o4, 4u4u:O4, 4u4u:o4, 4u4y:O4, 4u4y:o4, 4u4z:O4, 4u4z:o4, 4u50:O4, 4u50:o4, 4u51:O4, 4u51:o4, 4u52:O4, 4u52:o4, 4u53:O4, 4u53:o4, 4u55:O4, 4u55:o4, 4u56:O4, 4u56:o4, 4u6f:O4, 4u6f:o4, 7ug6:g, 7uoo:g, 7uqb:g, 7uqz:g, 7v08:g, 4v6i:Bi, 4v7f:f, 4v88:Bg, 4v88:Dg, 4v8t:g, 4v8y:Bg, 4v8z:Bg, 8v87:g, 4v91:g, 6xiq:g, 6xir:g, 8y0u:Lg, 6ylg:g, 6ylh:g, 6ylx:g, 6yly:g, 7z34:g, 6z6j:Lg, 6z6k:Lg, 7zpq:Bf, 7zrs:Bf, 7zs5:Bh, 7zuw:Bf, 7zux:Ef, 7zw0:Lj
7 4v3p:Li 119 116 0.5175 0.4958 0.5086 1.05e-30 8azw:T, 8b2l:T3, 8ip8:PB, 8ipa:PB, 8ipb:PB, 8jiv:Cg, 7qiw:i, 7qiz:i, 4v7e:Cg
8 9bh5:Cg 104 104 0.4825 0.5288 0.5288 4.65e-29 9cai:Cg
9 5it7:gg 121 108 0.4912 0.4628 0.5185 8.03e-29 6uz7:Bg
10 3j79:a 106 106 0.4737 0.5094 0.5094 3.33e-28 3jbn:Aa, 3jbo:Aa, 3jbp:Aa, 8tpu:Aa, 5umd:a
11 4v8p:AL 108 101 0.4649 0.4907 0.5248 1.57e-27 4v8p:DL, 4v8p:FL, 4v8p:HL
12 6zu5:LGG 100 102 0.4123 0.4700 0.4608 9.05e-27
13 5xxb:f 107 108 0.4737 0.5047 0.5000 1.16e-25
14 6zj3:Lw 114 111 0.4912 0.4912 0.5045 1.77e-25
15 4v8m:Bj 161 112 0.4474 0.3168 0.4554 1.88e-23 8ova:Bj, 8ove:Bj, 5t5h:j
16 8ovj:h 127 109 0.3860 0.3465 0.4037 3.74e-20 8a3w:h, 8a98:h, 6az3:h, 3jcs:h, 8rxh:Lh, 8rxx:Lh, 5t2a:h
17 8p5d:LGG 104 101 0.3947 0.4327 0.4455 2.98e-16 8p60:LGG, 8p60:KGG, 7qca:LGG
18 5xy3:g 115 113 0.3596 0.3565 0.3628 4.74e-16
19 8btd:Lh 116 112 0.3333 0.3276 0.3393 9.20e-13 8br8:Lh, 8brm:Lh, 8bsi:Lh, 8bsj:Lh, 8btr:Lh, 8fru:g, 7pwg:g, 7pwo:g2
20 7qep:O4 100 92 0.2982 0.3400 0.3696 2.00e-11
21 6rm3:LGG 100 92 0.2632 0.3000 0.3261 8.04e-10
22 6skf:Be 89 80 0.2456 0.3146 0.3500 8.26e-06 6skg:Be, 6th6:Be
23 4v4n:Ad 89 80 0.2281 0.2921 0.3250 4.67e-05 4v6u:Bd
24 8hku:L34E 77 46 0.1579 0.2338 0.3913 0.001 8hkv:L34E, 8hky:L34E, 8hkz:L34E, 8hl1:L34E, 8hl2:L34E, 8hl3:L34E, 8hl4:L34E, 8hl5:L34E
25 8r7i:A 628 90 0.2105 0.0382 0.2667 2.2
26 7sci:A 487 79 0.1754 0.0411 0.2532 4.1 7yx8:A, 7yx8:B
27 9b4h:A 1908 51 0.1491 0.0089 0.3333 7.8 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
28 1ajy:A 71 38 0.1316 0.2113 0.3947 10.0 1ajy:B, 1zme:C, 1zme:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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