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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VQPPLQLPGLIIFVHGVNSEGEWYDYAERSLCAGLNQRLGLEGEHGLKENNYEGGFFVKKWVSGPRKITKGGDGRSPVIR
FYWGYRAADNETDTYAIPLKNKKGDNYYDLPPESRKAKGPWFWGGGPFQNGCNQLVSLWSKTGFNNLGVPLPFSTQVLND
RLLSDAPPRHYYAHAAGRLAKLIKTIRNQHPEDTVTVLSHSQGTMIALAAAAIEAPDALFVMNSPYALENEPTTYISYPI
KEIISRKARSATFADIVKKVAENKTSWIPEGKTHNGLPERDNHGTTWIYCNPHDRVMGSSPLRSIGWQGLPDTKDGTPHT
LFKQAGDTLYVRILGRNTPCGGTPTAQTHFSNLGDGKPFWDSTTTLLQRATWPDPDSGQTLTINAPQVPEPLTAEELKNF
DQDYARDEKQSGGAGYAYGQINPETKKPVDTDYRYYISYEKQSQEEMLEEVRTYVQRPTDHSTLPSDERFMSRVVAYDLP
IGYCWHSWDKAGLEELRRQADWLESDDYYFSGKLTVPPIPPAIKQDVAEDAEQRKAEEKARLR

The query sequence (length=543) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8boz:A 541 546 0.9834 0.9871 0.9780 0.0 8boz:C, 8boz:M, 8boz:O
2 8boz:G 558 560 0.9890 0.9624 0.9589 0.0 8boz:E, 8boz:I, 8boz:K
3 4yz0:A 198 53 0.0313 0.0859 0.3208 2.7 4ew9:A, 4ew9:B, 3t9g:A, 3t9g:B, 4yz0:B, 4yza:A, 4yza:B, 4yzq:A, 4yzq:B, 4yzx:A, 4yzx:B, 4z03:A, 4z03:B, 4z05:A, 4z05:B, 4z06:A, 4z06:B
4 4ney:B 173 52 0.0258 0.0809 0.2692 6.1 4ney:A, 4nez:A
5 4ney:B 173 52 0.0258 0.0809 0.2692 6.1 4ney:A, 4nez:A
6 3lfz:A 280 144 0.0645 0.1250 0.2431 7.6 3kh5:A
7 1po0:A 661 39 0.0258 0.0212 0.3590 8.2 1po3:A, 1po3:B
8 8xku:B 845 70 0.0442 0.0284 0.3429 8.4 8xkv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218