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BioLiP
>protein
VQDAPTKKEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATL
EILIPDFVKQKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMACGK
HTVRGWCKNKRVGKQLASQKILQLLHPHVKNWGSLLRMYGRESSKMVKQETSDKSVIELQQYAKKNKPNLHILSKLQEEM
KRLAEEREET

The query sequence (length=250) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 9asp:B 250 250 1.0000 1.0000 1.0000 0.0 9asm:B, 9asn:B, 9asq:B
2 6v5b:C 217 250 0.8600 0.9908 0.8600 1.29e-151 6v5b:B, 6v5c:C, 6v5c:B
3 9asp:C 92 68 0.2720 0.7391 1.0000 2.05e-44
4 9asp:C 92 51 0.1160 0.3152 0.5686 6.20e-09
5 3p0j:A 657 28 0.0520 0.0198 0.4643 0.21 3p0h:B, 3p0i:B, 3p0j:B
6 6sdw:A 177 41 0.0600 0.0847 0.3659 0.51 6htu:A, 6htu:B, 6htu:C, 6sdy:A
7 2l3j:A 236 74 0.1000 0.1059 0.3378 0.62 2l3c:A
8 9ash:J 311 128 0.1280 0.1029 0.2500 1.5 9asi:J, 6xn3:J, 6xn4:J, 6xn5:J, 6xn7:J
9 6gie:A 218 89 0.0920 0.1055 0.2584 3.1
10 3u48:B 742 103 0.1080 0.0364 0.2621 3.7 3u48:A, 3u4a:B, 3u4a:A
11 8dfv:K 253 73 0.0960 0.0949 0.3288 3.8 8dg5:K
12 8dga:K 182 73 0.0960 0.1319 0.3288 4.3 8dg7:K
13 7b7r:A 301 33 0.0520 0.0432 0.3939 5.3 9aya:D, 7b94:A, 7b9l:A, 5eym:A, 5eym:B, 3sls:A
14 5yt3:C 288 33 0.0520 0.0451 0.3939 5.5
15 9ay7:B 322 33 0.0520 0.0404 0.3939 5.8 4an2:A, 4an3:A, 4an9:A, 4anb:A, 4ark:A, 9axa:B, 9axa:D, 9axc:B, 9axc:D, 9axh:A, 9axh:B, 9axm:A, 9axm:C, 9axx:A, 9axx:C, 9axy:B, 9aya:B, 7b3m:A, 7b3m:B, 7b7r:B, 7b94:B, 7b9l:B, 5bx0:A, 8dgs:B, 8dgt:B, 3dv3:A, 3dy7:A, 3e8n:A, 3eqb:A, 3eqc:A, 3eqd:A, 3eqf:A, 3eqg:A, 3eqh:A, 3eqi:A, 7f2x:A, 5hze:A, 7juq:C, 7jur:C, 7jus:C, 7jut:C, 7juu:C, 7juv:C, 7juw:C, 7jux:C, 7juy:C, 7juz:C, 7jv0:C, 7jv1:C, 4lmn:A, 7m0t:B, 7m0u:B, 7m0v:B, 7m0w:B, 7m0x:B, 7m0y:B, 7m0z:B, 3mbl:A, 7mfd:B, 4mne:A, 4mne:D, 4mne:E, 4mne:H, 6nyb:B, 3orn:A, 3os3:A, 2p55:A, 3pp1:A, 6pp9:B, 7pqv:A, 6q0j:C, 6q0j:D, 6q0t:C, 1s9j:A, 3sls:B, 6u2g:A, 4u7z:A, 4u80:A, 4u81:A, 7umb:C, 3v01:A, 3v04:A, 6v2w:B, 3vvh:A, 3vvh:B, 3vvh:C, 3w8q:A, 3wig:A, 7xlp:A, 7xnc:A, 2y4i:C, 5yt3:A, 5yt3:B, 5yt3:D, 3zls:A, 3zlw:A, 3zlx:A, 3zly:A, 3zm4:A
16 3vyy:A 86 70 0.0840 0.2442 0.3000 6.1 3vyy:B
17 5e6m:A 519 64 0.0640 0.0308 0.2500 9.6 4kr2:A, 4kr3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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