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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VQDAPTKKEFVINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATL
EILIPDFVKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLKRNHGMGDTSIKFEVVPGKNQKSEYVMACGKHT
VRGWCKNKRVGKQLASQKILQLLHPHVKNWGSLLRMYGRESSDKSVIELQQYAKKNKPNLHILSKLQEEMKRLAEEREET

The query sequence (length=240) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 9asp:B 250 250 1.0000 0.9600 0.9600 2.61e-178 9asm:B, 9asn:B, 9asq:B
2 6v5b:C 217 240 0.8917 0.9862 0.8917 1.36e-153 6v5b:B, 6v5c:C, 6v5c:B
3 9asp:C 92 68 0.2833 0.7391 1.0000 2.40e-44
4 9asp:C 92 24 0.1000 0.2609 1.0000 2.05e-08
5 3p0j:A 657 28 0.0542 0.0198 0.4643 0.23 3p0h:B, 3p0i:B, 3p0j:B
6 6sdw:A 177 195 0.2208 0.2994 0.2718 0.37 6htu:A, 6htu:B, 6htu:C, 6sdy:A
7 9ash:J 311 133 0.1375 0.1061 0.2481 0.41 9asi:J, 6xn3:J, 6xn4:J, 6xn5:J, 6xn7:J
8 1t3d:A 262 87 0.1042 0.0954 0.2874 0.56 7e3y:A, 7e3y:C, 7e3y:B, 8i04:A, 8i04:C, 8i04:B, 8i06:A, 8i06:B, 8i09:A, 8i09:B, 8i09:C, 8i09:D, 8i09:E, 8i09:F, 8i09:G, 8i09:H, 8i09:I, 8i09:J, 8i09:K, 8i09:L, 6jvu:A, 6jvu:C, 6jvu:B, 6jvu:D, 6jvu:F, 6jvu:E, 1t3d:B, 1t3d:C
9 2l3j:A 236 74 0.1042 0.1059 0.3378 0.60 2l3c:A
10 8dfv:K 253 73 0.1000 0.0949 0.3288 3.8 8dg5:K
11 8dga:K 182 73 0.1000 0.1319 0.3288 4.1 8dg7:K
12 3u48:B 742 103 0.1125 0.0364 0.2621 4.3 3u48:A, 3u4a:B, 3u4a:A
13 4h7o:A 258 33 0.0500 0.0465 0.3636 5.7 4h7o:C, 4h7o:B
14 4z63:A 610 50 0.0667 0.0262 0.3200 6.5 4z64:A
15 3vyy:A 86 68 0.0875 0.2442 0.3088 6.6 3vyy:B
16 6gie:A 218 77 0.0833 0.0917 0.2597 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218