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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VQADHELFLQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSHRNSRTNIKRKTFKVDDMLSKVEKMKGEQESAHLQLTFT
GFFHKVTLEVLLVKVCHKKRKDVSCPIRQVPTGKQVPLNPDLNQTKPSLAVSSNEFEPSNSHMVKSYSLLFRFVAQMTVF
DKNRRLQLLDGEYEVAMQEMQGPTLQFTLRWTGRQKLRIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKL
CHSRFIFNYVYHPKGARIDVSINECYDFSRNGPVKRTPITHILVCRPKRTKASMSEFLEW

The query sequence (length=300) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8tb9:D 443 317 0.9733 0.6591 0.9211 0.0 6c23:A, 6c23:Q, 6c24:A, 6c24:Q, 5wai:B, 5wai:F
2 7kso:C 420 309 0.8867 0.6333 0.8608 0.0 6nq3:F
3 6nq3:B 291 312 0.8700 0.8969 0.8365 7.88e-180
4 5wak:B 196 286 0.6067 0.9286 0.6364 9.90e-114
5 7shg:A 591 127 0.0933 0.0474 0.2205 0.26 7shg:B
6 5fok:A 656 43 0.0567 0.0259 0.3953 3.5 5fok:B
7 3vcz:B 127 52 0.0433 0.1024 0.2500 6.2
8 3vkh:B 2908 155 0.1400 0.0144 0.2710 6.3
9 8z8x:B 710 41 0.0500 0.0211 0.3659 6.5 8z90:B
10 3vkg:B 2853 155 0.1400 0.0147 0.2710 6.9
11 3vkh:A 3042 155 0.1400 0.0138 0.2710 6.9
12 8z9h:B 676 41 0.0500 0.0222 0.3659 7.3 8p0b:B, 8p0g:B, 8p0u:B, 8z85:B, 8z8j:B, 8z8n:B, 8z97:B, 8z9h:I, 8z9r:B, 8z9r:I
13 5ynv:B 313 51 0.0467 0.0447 0.2745 7.4 5y72:A, 5y72:B, 5y7c:A, 5y7c:B, 5y84:A, 5y84:B, 5ynt:A, 5ynt:B, 5ynu:A, 5ynu:B, 5ynv:A, 5ynw:A, 5ynw:B
14 8z98:B 647 41 0.0500 0.0232 0.3659 7.5 8z9q:B
15 8tnq:C 35 31 0.0400 0.3429 0.3871 9.2 8tnp:C, 8tnr:C
16 3vkg:A 2954 151 0.1400 0.0142 0.2781 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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