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BioLiP
>protein
VPRGSHMTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQVGHGLVV
DFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRD
RLN

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3nbk:D 163 163 1.0000 1.0000 1.0000 6.69e-120 6g6v:A, 3lcj:A, 3nba:A, 3nba:B, 3nba:C, 3nba:D, 3nbk:A, 3nbk:B, 3nbk:C, 3pnb:A, 3pnb:B, 3pnb:C, 3pnb:D, 6qmf:A, 6qmg:A, 6qmh:A, 6qmi:A, 3rba:A, 3rhs:A, 3uc5:A
2 5o08:A 160 156 0.7546 0.7688 0.7885 1.51e-89 5o08:B, 5o08:C, 5o0a:A, 5o0a:B, 5o0a:C, 5o0b:A, 5o0b:B, 5o0b:C, 5o0c:A, 5o0c:B, 5o0c:C, 5o0d:B, 5o0d:C, 5o0f:B, 5o0f:C, 5o0h:B, 5o0h:C, 8qid:A, 8qid:B, 8qid:C, 8qix:B, 8qix:C, 8qiy:A, 8qiy:B, 8qj8:A, 8qj8:B, 8qj8:C, 7ywm:A, 7ywm:B, 7ywm:C, 7yxz:A, 7yxz:B, 7yxz:C, 7yy0:B, 7yy0:C, 7yy1:A, 7yy1:B, 7yy1:C, 7yy2:A, 7yy2:B, 7yy2:C, 7yy3:A, 7yy3:B, 7yy3:C, 7yy4:B, 7yy4:C, 7yy5:B, 7yy5:C, 7yy6:A, 7yy6:B, 7yy6:C, 7yy7:B, 7yy7:C, 7yy8:B, 7yy8:C, 7yy9:A, 7yy9:B, 7yy9:C, 7yya:A, 7yya:B, 7yyb:B, 7yyb:C, 7yyc:A, 7yyc:B, 7yyc:C
3 1vlh:B 158 155 0.4724 0.4873 0.4968 1.83e-51 1vlh:A, 1vlh:F, 1vlh:C, 1vlh:D, 1vlh:E
4 1od6:A 155 153 0.4663 0.4903 0.4967 8.66e-50
5 4nah:C 160 157 0.4233 0.4313 0.4395 9.48e-49 3f3m:A, 4nah:A, 4nah:B, 4nah:D, 4nah:E, 4nah:F, 4nat:A, 4nat:B, 4nat:C, 4nau:A, 4nau:B, 4nau:C
6 9iye:B 173 162 0.4417 0.4162 0.4444 4.38e-48 8i8j:A, 8i8j:B, 8i8j:C, 8i8j:D, 8i8j:E, 8i8j:F, 8i8k:A, 8i8k:B, 8i8k:C, 8i8k:D, 8i8k:E, 8i8k:F, 8i8l:A, 8i8l:B, 8i8l:C, 8i8l:D, 8i8l:E, 8i8l:F, 8i8m:A, 8i8m:B, 8i8m:C, 8i8m:D, 8i8m:E, 8i8m:F, 8i8n:A, 8i8n:B, 8i8n:C, 8i8n:D, 8i8n:E, 8i8n:F, 8i8o:A, 8i8o:B, 8i8o:C, 8i8o:D, 8i8o:E, 8i8o:F, 9iye:A, 9iye:C, 9iye:D, 9iye:E, 9iye:F, 9iyf:A, 9iyf:B, 9iyf:C, 9iyf:D, 9iyf:E, 9iyf:F, 9iyh:A, 9iyh:B, 9iyh:C, 9iyh:D, 9iyh:E, 9iyh:F, 8zn2:A, 8zn2:B, 8zn2:C, 8zn2:D, 8zn2:E, 8zn2:F, 8zn3:A, 8zn3:B, 8zn3:C, 8zn3:D, 8zn3:E, 8zn3:F
7 6cck:B 160 154 0.4172 0.4250 0.4416 1.05e-44 1b6t:B, 6b7a:A, 6b7a:B, 6b7b:A, 6b7b:B, 6b7c:A, 6b7c:B, 6b7d:A, 6b7e:B, 6b7f:A, 6b7f:B, 6cck:A, 6ccl:A, 6ccl:B, 6ccm:A, 6ccn:A, 6ccn:B, 6cco:A, 6ccq:A, 6ccq:B, 6ccs:A, 6ccs:B, 6chl:A, 6chl:B, 6chm:A, 6chm:B, 6chn:A, 6chn:B, 6cho:A, 6cho:B, 6chp:A, 6chp:B, 6chq:A, 6ckw:A, 6ckw:B, 1gn8:A, 1gn8:B, 1h1t:A, 1h1t:B, 1qjc:B
8 1o6b:A 163 154 0.4110 0.4110 0.4351 4.54e-44
9 3l92:A 159 157 0.4110 0.4214 0.4268 1.87e-43
10 5ts2:A 165 158 0.3926 0.3879 0.4051 2.77e-42 4ruk:A, 4ruk:F, 4ruk:B, 4ruk:E, 4ruk:C, 4ruk:D, 5ts2:B, 5ts2:C, 5ts2:D, 5ts2:E, 5ts2:F, 3x1j:A, 3x1j:C, 3x1j:B, 3x1k:A, 3x1k:B, 3x1k:C, 3x1k:D, 3x1k:E, 3x1k:F, 3x1m:A, 3x1m:C, 3x1m:B
11 6a6d:A 163 148 0.3926 0.3926 0.4324 1.13e-40 6a75:A, 6a7d:A, 8i8p:A, 6j3m:A, 6jnh:A, 6jog:A, 6kkw:A, 5yh7:A, 5yrr:A, 5zzc:A
12 3k9w:A 163 157 0.4049 0.4049 0.4204 1.01e-39 3pxu:A
13 3nd6:A 152 154 0.3620 0.3882 0.3831 1.27e-34 3nd6:B, 3nd6:C, 3nd6:D, 3nd6:E, 3nd6:F, 3nd7:A, 3nd7:B, 3nd7:C, 3nd7:D, 3nd7:E, 3nd7:F
14 4f3r:B 149 153 0.3620 0.3960 0.3856 6.36e-30
15 3otw:A 157 145 0.3190 0.3312 0.3586 3.92e-27 3otw:D, 3otw:B, 3otw:C, 3otw:E, 3otw:F
16 1f9a:A 164 58 0.1104 0.1098 0.3103 0.039 1f9a:B, 1f9a:C, 1f9a:D, 1f9a:E, 1f9a:F
17 3glv:B 122 61 0.1104 0.1475 0.2951 0.071
18 1coz:A 126 35 0.0859 0.1111 0.4000 0.077 1coz:B, 1n1d:A, 1n1d:B, 1n1d:C, 1n1d:D
19 2ejc:A 280 28 0.0859 0.0500 0.5000 0.21
20 5hg0:B 262 26 0.0613 0.0382 0.3846 0.74 5hg0:A, 3n8h:A, 3n8h:B, 3qtt:A, 3qtt:B
21 6rtg:A 503 52 0.1043 0.0338 0.3269 1.3
22 5ixh:B 161 34 0.0798 0.0807 0.3824 1.5 5ixh:A
23 1k4m:A 213 198 0.2577 0.1972 0.2121 2.0 1k4m:B, 1k4m:C
24 7l07:A 214 47 0.1166 0.0888 0.4043 2.1
25 6eew:A 479 82 0.1534 0.0522 0.3049 3.0 6eew:B, 6eew:C, 6eew:D
26 4izt:A 263 46 0.1043 0.0646 0.3696 3.1 4izs:A, 4izu:A, 4izv:A, 4izw:A, 5ny7:A, 5nyb:A, 5nyc:A, 5nye:A
27 3guz:B 167 37 0.0920 0.0898 0.4054 3.8 3guz:A
28 3uy4:A 283 28 0.0736 0.0424 0.4286 5.6
29 1yum:A 212 63 0.1227 0.0943 0.3175 5.8 1yum:B, 1yum:C, 1yum:D, 1yun:A, 1yun:B
30 5kha:A 526 61 0.1166 0.0361 0.3115 5.8 5kha:B
31 1h1y:B 219 62 0.1104 0.0822 0.2903 6.7 1h1z:A, 1h1z:B
32 3inn:C 284 28 0.0675 0.0387 0.3929 7.7 3inn:A, 3inn:D
33 8sij:A 445 57 0.1043 0.0382 0.2982 8.2 8sij:B
34 8aih:A 184 143 0.1595 0.1413 0.1818 8.5 8aii:A, 9fyb:A, 9fyb:B
35 2vbi:A 554 70 0.1227 0.0361 0.2857 9.4 2vbi:B, 2vbi:C, 2vbi:D, 2vbi:E, 2vbi:F, 2vbi:G, 2vbi:H
36 8tri:C 419 66 0.1288 0.0501 0.3182 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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