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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VPPEVFDLVAEDKARCMSEHGTTQAQIDDVDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDEDIMLGLLPDQLQERAQS
VMGKCLPTSGSDNCNKIYNLAKCVQESAPDVWFVI

The query sequence (length=115) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3d73:A 119 115 0.9913 0.9580 0.9913 4.21e-82 3bfa:A, 3bfb:A, 3bjh:A, 3cyz:A, 3cyz:B, 3cz0:A, 3cz0:B, 3cz1:A, 3cz1:B, 3d73:B, 3d74:A, 3d74:B, 3d75:A, 3d76:A, 3d77:A, 3d78:A, 3d78:B
2 3k1e:B 116 114 0.2957 0.2931 0.2982 3.59e-16
3 5el2:A 125 114 0.2609 0.2400 0.2632 7.78e-13 5el2:B, 4fqt:A, 4fqt:B, 3n7h:A, 3n7h:B, 3ogn:A, 3ogn:B
4 3r1v:A 124 89 0.1913 0.1774 0.2472 1.24e-07 3r1v:B
5 8bxv:AAA 123 108 0.2000 0.1870 0.2130 8.97e-05 8bxw:AAA
6 8c6e:A 124 105 0.1913 0.1774 0.2095 0.004 3q8i:A
7 3r72:A 122 115 0.1913 0.1803 0.1913 0.006
8 3rzs:A 119 46 0.1217 0.1176 0.3043 0.12 3s0b:A, 3s0d:A, 3s0e:A
9 1ooh:A 126 104 0.1913 0.1746 0.2115 0.13 3b6x:A, 3b6x:B, 3b7a:A, 3b86:A, 3b86:B, 2gte:A, 2gte:B, 1oog:A, 1oog:B, 1ooh:B
10 2wc5:A 141 100 0.2261 0.1844 0.2600 0.50 2wc6:A, 2wch:A, 2wcj:A, 2wcl:A, 2wcm:A
11 8izl:A 2067 49 0.1391 0.0077 0.3265 0.68 8izm:A, 8x01:A, 8yxm:A, 8yxp:A
12 6nbn:A 123 97 0.1652 0.1545 0.1959 0.84 6ogh:A, 6oii:A, 6oii:B, 6opb:E, 6opb:F, 6opb:I
13 6v4c:A 294 53 0.1565 0.0612 0.3396 0.85
14 5gpc:A 190 69 0.1304 0.0789 0.2174 1.3 5gpc:B, 5gpc:C, 5gpc:D
15 3oth:A 395 26 0.1043 0.0304 0.4615 2.8 3otg:A, 3oth:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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