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BioLiP
>protein
VPMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQA
AALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYK
QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNY

The query sequence (length=227) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jx7:A 232 226 0.9956 0.9741 1.0000 1.26e-167 5cl3:A, 5cl4:A, 5cl5:A, 5cl6:A, 5cl7:A, 5cl8:A, 5cl9:A, 5cla:A, 5clb:A, 5clc:A, 5cld:A, 5cle:A, 3jxy:A, 3jxz:A, 3jy1:A, 5kub:A, 7lxh:A, 7lxj:A, 5uuf:A, 5uug:A, 5uuh:A
2 4f48:B 97 58 0.0617 0.1443 0.2414 0.87
3 6xgw:B 356 59 0.0749 0.0478 0.2881 0.92 6xg8:B, 6xgx:B
4 6xgx:A 402 54 0.0661 0.0373 0.2778 3.7 6xg8:A, 6xgw:A
5 5yvg:A 830 82 0.1013 0.0277 0.2805 5.5 2h4m:B, 2ot8:B, 5yvh:A
6 5mqr:A 1082 76 0.0837 0.0176 0.2500 6.0 5mqs:A
7 3kyq:A 193 20 0.0396 0.0466 0.4500 6.3
8 8as8:A 597 83 0.0925 0.0352 0.2530 7.5 8as8:B, 8bfn:A, 8bfn:B, 8bfn:F, 8bfn:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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