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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VPLASRAACEALKDGNGDMVWPNAATVVEVAAWRDAAPATASAAALPEHCEVSGAIAKRTGIDGYPYEIKFRLRMPAEWN
GRFFMEGGSGTNGSLSAATGSIGGGQIASALSRNFATIATDGGHDNAVNDNPDALGTVAFGLDPQARLDMGYNSYDQVTQ
AGKAAVARFYGRAADKSYFIGCSEGGREGMMLSQRFPSHYDGIVAGAPGYQLPKAGISGAWTTQSLAPAAVGLDAQGVPL
INKSFSDADLHLLSQAILGTCDALDGLADGIVDNYRACQAAFDPATAANPANGQALQCVGAKTADCLSPVQVTAIKRAMA
GPVNSAGTPLYNRWAWDAGMSGLSGTTYNQGWRSWWLGSFNSSANNAQRVSGFSARSWLVDFATPPEPMPMTQVAARMMK
FDFDIDPLKIWATSGQFTQSSMDWHGATSTDLAAFRDRGGKMILYHGMSDAAFSALDTADYYERLGAAMPGAAGFARLFL
VPGMNHCSGGPGTDRFDMLTPLVAWVERGEAPDQISAWSGTPGYFGVAARTRPLCPYPQIARYKGSGDINTEANFACAAP
P

The query sequence (length=561) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6qz4:A 568 561 1.0000 0.9877 1.0000 0.0 8ekg:A, 8ekg:B, 8ekg:C, 8ekg:E, 8ekg:D, 8ekg:F, 6jtt:A, 6jtt:B, 6jtt:C, 6jtu:A, 6jtu:B, 6jtu:C, 6qg9:A, 6qg9:B, 6qg9:C, 6qg9:D, 6qg9:E, 6qg9:F, 6qg9:G, 6qg9:H, 6qg9:I, 6qg9:J, 6qga:A, 6qga:B, 6qga:C, 6qga:D, 6qga:E, 6qga:F, 6qgb:A, 6qgb:B, 6qgb:C, 6qgb:D, 6qgb:E, 6qgb:F, 6qz1:A, 6qz2:A, 6qz2:B, 6qz2:C, 6qz2:D, 6qz2:E, 6qz2:F, 6qz2:G, 6qz2:H, 6qz2:I, 6qz2:J, 6qz3:A, 6qz4:B
2 6fat:A 508 510 0.2496 0.2756 0.2745 1.30e-40 8bhh:B, 8bhh:A, 6fat:B
3 6g21:A 504 542 0.2513 0.2798 0.2601 3.20e-40 6g21:B
4 3wmt:A 503 512 0.2406 0.2684 0.2637 1.45e-36 3wmt:B
5 7k4o:A 554 502 0.2193 0.2220 0.2450 9.21e-23
6 6bqw:A 275 167 0.0749 0.1527 0.2515 0.25 6bqw:B, 6bqw:C, 6bqw:D, 6bqw:E, 6bqw:F, 6bqw:G, 6bqw:H, 6bqw:I, 6f95:A, 6f95:B, 6f95:C, 6f95:D, 6f95:E
7 5b68:A 703 105 0.0499 0.0398 0.2667 0.33
8 3pnz:A 329 53 0.0321 0.0547 0.3396 2.7 3pnz:B, 3pnz:C, 3pnz:D, 3pnz:E, 3pnz:F
9 7vw7:B 593 65 0.0374 0.0354 0.3231 2.8 7coq:C, 7dqd:B, 7dqd:C, 7dqd:J, 7dqd:K, 7dqe:A, 7dqe:B, 7dqe:C, 8igv:A, 8igv:B, 8igv:C, 8igw:A, 8igw:B, 8igw:C, 8igw:G, 8igw:H, 8igw:I, 5knb:B, 5knb:C, 5knc:A, 5knc:B, 5knc:C, 3vr3:B, 3vr3:C, 3vr6:B, 3vr6:C, 7vw7:C, 5ze9:A, 5ze9:B, 5ze9:C
10 5dua:A 445 100 0.0499 0.0629 0.2800 4.6 5du9:A, 5du9:B, 5dua:B
11 2e46:A 157 99 0.0481 0.1720 0.2727 5.2 2e47:A, 2e47:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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