BioLiP

>protein
VPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTYNLTVGDTGSGLIVFFPGFPGSIVGAHYTLQSNGNYKFDQMLLTAQN
LPASYNYCRLVSRSLTVRSSTLPLNGTINAVTFQGSLSELTDVSYNGLMSATANINDKIGNVLVGEGVTVLSLPTSYDLG
YVRLGDPIPAIGLDPKMVATCDSSDRPRVYTITAADDYQFSSQYQSGGVTITLFSANIDAITSLSIGGELVFHTSVHGLA
LDATIYLIGFDGTTVITRAVASDNGLTTGIDNLMPFNLVIPTNEITQPITSIKLEIVTSKSGGQAGDQMSWSASGSLAVT
IHGGNYPGALRPVTLVAYERVATGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYTKLILSERERLGIKTVWPT
REYTDFREYFM

The query sequence (length=411) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	2gsy:E	433	416	0.9732	0.9238	0.9615	0.0	2df7:A, 2df7:F, 2df7:B, 2df7:C, 2df7:E, 2df7:L, 2df7:G, 2df7:K, 2df7:M, 2df7:H, 2df7:N, 2df7:O, 2df7:I, 2df7:J, 2df7:Q, 2df7:P, 2df7:R, 2df7:S, 2df7:T, 2gsy:A, 2gsy:B, 2gsy:C, 2gsy:J, 2gsy:D, 2gsy:F, 2gsy:I, 2gsy:K, 2gsy:G, 2gsy:H, 2gsy:N, 2gsy:L, 2gsy:M, 2gsy:R, 2gsy:O, 2gsy:P, 2gsy:Q, 2gsy:S, 2gsy:T
2	3pzc:B	276	54	0.0414	0.0616	0.3148	0.88	3mey:B, 3mf1:B
3	4gyj:A	618	72	0.0560	0.0372	0.3194	1.2	3bmx:A, 3bmx:B, 4gyj:B, 4gyk:A, 3nvd:A, 3nvd:B
4	5jrk:A	695	78	0.0462	0.0273	0.2436	3.4	5jrk:B
5	7rk5:B	501	82	0.0487	0.0399	0.2439	3.4	7rk5:A
6	2cb3:C	173	84	0.0560	0.1329	0.2738	4.3	2cb3:A, 2cb3:B, 2cb3:D
7	6u5w:A	1435	101	0.0608	0.0174	0.2475	9.9

[Back]